{"id":"W1991164591","doi":"10.1016/j.cbd.2013.08.002","title":"Assessing gene network stability and individual variability in the fathead minnow (Pimephales promelas) transcriptome","year":2013,"lang":"en","type":"review","venue":"Comparative Biochemistry and Physiology Part D Genomics and Proteomics","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of New Brunswick","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Transcriptome; DNA microarray; Gene expression; Gene; Genetics; Microarray analysis techniques; Microarray; Computational biology; Gene expression profiling; Fold change","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009729973,0.0004785352,0.0009009271,0.00003003867,0.0002409764,0.0001520734,0.0003036207,0.000574486,0.000009363967],"category_scores_gemma":[0.00003375135,0.0003500007,0.0001089286,0.0001274286,0.0005656203,0.0000140973,0.0001907412,0.0004340863,9.820848e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002828762,"about_ca_system_score_gemma":0.0002229442,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003138774,"about_ca_topic_score_gemma":0.000002678044,"domain_scores_codex":[0.9973351,0.000761418,0.0005530765,0.0009395672,0.0000805731,0.0003302102],"domain_scores_gemma":[0.998862,0.000131627,0.0003377279,0.0005049405,0.00005920621,0.0001045542],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002383129,0.0004606409,0.00072461,0.009132403,0.0006359529,0.000001920936,0.002035827,0.00001069153,0.8182537,0.0002348372,0.00142168,0.1668494],"study_design_scores_gemma":[0.00121078,0.0003731799,0.002711396,0.001021936,0.0005565552,0.0001228907,0.0009720768,0.0001615825,0.06125935,0.001999801,0.9278275,0.001782929],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.4393161,0.5592588,0.0001096012,0.00003015425,0.00006760948,0.00104127,0.0001093044,0.000004572839,0.00006263153],"genre_scores_gemma":[0.1767482,0.8196766,0.001062433,0.00007999552,0.0005043023,0.0007394673,0.00113602,0.00002518932,0.0000277489],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9264058,"threshold_uncertainty_score":0.9998952,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1259777648718887,"score_gpt":0.3458713593416283,"score_spread":0.2198935944697395,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}