{"id":"W1991331972","doi":"10.1186/1742-4690-5-43","title":"Highly diversified multiply drug-resistant HIV-1 quasispecies in PBMCs: a case report","year":2008,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Jewish General Hospital","funders":"","keywords":"Viral quasispecies; Virology; Peripheral blood mononuclear cell; Drug resistance; Frameshift mutation; Genotyping; Medicine; Biology; Mutation; Nonsense mutation; Genetics; Virus; Gene; Genotype; In vitro; Hepatitis C virus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002063476,0.0002395578,0.0005515917,0.000349224,0.0001509337,0.000005514934,0.00007828643,0.0001543535,0.0001956591],"category_scores_gemma":[0.0001737528,0.0002033141,0.0001282159,0.0002736666,0.0002126294,0.00006522228,0.00007746566,0.00024623,0.000328992],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002908248,"about_ca_system_score_gemma":0.0001844399,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003372033,"about_ca_topic_score_gemma":0.0004955066,"domain_scores_codex":[0.998226,0.00008847938,0.0004944962,0.0004869364,0.0002500126,0.0004540425],"domain_scores_gemma":[0.999068,0.000143915,0.0001303754,0.0004264732,0.00006041245,0.0001708857],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"case_report","study_design_gemma":"observational","study_design_scores_codex":[0.0006453168,0.0003877856,0.4438845,0.00002518955,0.0001256168,0.5417246,0.002101705,0.000003398175,0.00090017,0.0001223694,0.009897809,0.0001815002],"study_design_scores_gemma":[0.01700594,0.0007037918,0.6177397,0.00009504967,0.0003557173,0.2312103,0.00223202,0.0002214615,0.002805009,0.00006194135,0.1267714,0.0007977348],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9892775,0.0003036851,0.00002435869,0.005335248,0.0001580924,0.0003699088,0.00001324715,0.00009804736,0.004419889],"genre_scores_gemma":[0.95475,0.0001123798,0.001579787,0.0002595904,0.00008891131,0.00003926839,0.00008939584,0.00002322425,0.04305746],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3105143,"threshold_uncertainty_score":0.8290909,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02070934300538851,"score_gpt":0.247567059804885,"score_spread":0.2268577167994965,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}