{"id":"W1991459051","doi":"10.3201/eid2004.130564","title":"Spread of Virulent Group A<i>Streptococcus</i>Type<i>emm59</i>from Montana to Wyoming, USA","year":2014,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Houston Methodist Research Institute; Houston Methodist Hospital; Fondren Foundation","keywords":"Phylogenetic tree; Virulence; Streptococcus; Whole genome sequencing; Biology; Genome; clone (Java method); Strain (injury); Phylogenetics; Microbiology; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001205665,0.0001500509,0.00008145444,0.0002854785,0.0007861875,0.0005163847,0.0001331253,0.0001970538,0.0008243309],"category_scores_gemma":[0.0001697015,0.00008085815,0.0001194347,0.0002967115,0.0001639052,0.0001305813,0.0003414216,0.0004732842,0.00009819421],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001641858,"about_ca_system_score_gemma":0.001917584,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.3160611,"about_ca_topic_score_gemma":0.5099655,"domain_scores_codex":[0.9998999,0.00001213821,0.000006457219,0.00002714443,0.00002130542,0.00003304887],"domain_scores_gemma":[0.9998897,0.000005895437,0.00002512654,0.000005649982,0.00004366265,0.00002993504],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006866854,0.000321075,0.616356,0.0001303634,0.0001135886,0.002605216,0.002499632,0.0004034127,0.2784215,0.00132749,0.006700406,0.09043459],"study_design_scores_gemma":[0.00002343417,0.0001918418,0.9757481,0.00006197654,0.00003640662,0.0007297655,0.001697384,0.0005762299,0.007696295,0.0001159112,0.0131073,0.00001531849],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931788,0.0002748063,0.0003188688,0.0005188811,0.00001998745,0.00004924784,0.0005523896,0.00001367751,0.005073272],"genre_scores_gemma":[0.994881,0.000433353,0.00105023,0.0005616766,0.000008374514,0.0000172794,0.001097844,0.000003502071,0.001946659],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3160611,"threshold_uncertainty_score":0.6284428,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01099753869564776,"score_gpt":0.2810527106920532,"score_spread":0.2700551719964054,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}