{"id":"W1991557315","doi":"10.1128/jcm.00775-10","title":"Characterization of <i>Staphylococcus aureus</i> Isolates with a Partial or Complete Absence of Staphylococcal Cassette Chromosome Elements","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University of Guelph; Health Sciences Centre; Sunnybrook Health Science Centre","funders":"","keywords":"SCCmec; Staphylococcus aureus; Biology; Microbiology; Amplicon; Transposable element; Autolysin; Locus (genetics); Staphylococcal infections; Sequence analysis; Polymerase chain reaction; Genetics; Gene; ORFS; Virology; Methicillin-resistant Staphylococcus aureus; Open reading frame; Genome; Antibiotics; Bacteria; Peptide sequence; Streptococcus pneumoniae","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001247175,0.0003040221,0.001846587,0.0002171912,0.00004899155,0.000010855,0.0004092906,0.0004272404,0.0004160246],"category_scores_gemma":[0.0008571408,0.000197757,0.0004547585,0.0003501908,0.001149128,0.000138511,0.00009158217,0.001158241,0.000009510866],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000250586,"about_ca_system_score_gemma":0.0007187954,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001340404,"about_ca_topic_score_gemma":0.00008282516,"domain_scores_codex":[0.9953886,0.0002272955,0.003424966,0.0003432364,0.0001775463,0.0004383031],"domain_scores_gemma":[0.9936619,0.0006864995,0.003806937,0.0004609858,0.00113031,0.0002533018],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00761899,0.0007064126,0.1190966,0.0001583172,0.0003653892,0.00008467674,0.00006450208,0.000001759224,0.8707052,0.00004547862,0.0004170501,0.0007355101],"study_design_scores_gemma":[0.01337096,0.01276676,0.1810746,0.001124079,0.0006048925,0.0009376392,0.00009495462,0.00005615377,0.7117869,0.00004685633,0.07758029,0.0005558575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968641,0.00003927653,0.0008996305,0.0005575932,0.0007839683,0.0004718445,0.0003280604,0.00001142343,0.00004404612],"genre_scores_gemma":[0.9924226,0.0001381726,0.006180443,0.0005258099,0.0005779056,0.000003628617,0.00004988355,0.00003641131,0.00006516018],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1589183,"threshold_uncertainty_score":0.8064295,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03451719069400872,"score_gpt":0.3408807929038808,"score_spread":0.3063636022098721,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}