{"id":"W1991813514","doi":"10.1128/iai.00339-13","title":"Divergent Immune Responses to Mycobacterium avium subsp. paratuberculosis Infection Correlate with Kinome Responses at the Site of Intestinal Infection","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research; Ministry of Agriculture - Saskatchewan","keywords":"Paratuberculosis; Biology; Kinome; Immune system; Microbiology; Mycobacterium; Virology; Immunology; Gene; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007265756,0.0002715134,0.0003726452,0.0004077407,0.0005334246,0.0001019772,0.00005009735,0.0001378642,0.001214413],"category_scores_gemma":[0.001139787,0.0001834677,0.0001359732,0.0007351923,0.0002554656,0.000381989,0.0002442829,0.0005079843,0.0003039935],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002224026,"about_ca_system_score_gemma":0.0001114578,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04083068,"about_ca_topic_score_gemma":0.001178589,"domain_scores_codex":[0.9979078,0.0006647141,0.0004397444,0.0002891977,0.0003293928,0.000369195],"domain_scores_gemma":[0.997813,0.0005617871,0.0001982805,0.0005357246,0.0006128783,0.0002783169],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003066182,0.0002806401,0.8538834,0.0001136913,0.0001078332,0.000004128232,0.0003746511,0.00001072441,0.139519,0.000009592769,0.0007874205,0.001842688],"study_design_scores_gemma":[0.0009740732,0.00270664,0.9605266,0.0002282835,0.000142952,0.0003079926,0.00003068407,0.00004681701,0.03004407,0.00001221928,0.004784961,0.0001946534],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967403,0.0001801609,0.0001181833,0.0008984259,0.0003546736,0.00102662,0.00002282918,0.0001067671,0.0005520703],"genre_scores_gemma":[0.9963455,0.001469375,0.00003597521,0.000227603,0.00007921098,0.0002551751,0.00006280955,0.00002604498,0.001498293],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1094749,"threshold_uncertainty_score":0.9996986,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02124937459917308,"score_gpt":0.2806551149856147,"score_spread":0.2594057403864417,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}