{"id":"W1991909065","doi":"10.1038/nature10549","title":"A draft genome of Yersinia pestis from victims of the Black Death","year":2011,"lang":"en","type":"article","venue":"Nature","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":799,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Michael G. DeGroote Institute for Infectious Disease Research, McMaster University; Wenner-Gren Foundation; Carl-Zeiss-Stiftung; Eunice Kennedy Shriver National Institute of Child Health and Human Development; Canada Research Chairs; Natural Sciences and Engineering Research Council of Canada; University at Albany; McMaster University; James S. McDonnell Foundation","keywords":"Yersinia pestis; Genome; Biology; Plague (disease); Genetics; Geography; Gene; Virulence; Archaeology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009074406,0.0001116192,0.0001507712,0.00003318171,0.00002822194,0.000004985917,0.000457717,0.0007442389,0.0001723288],"category_scores_gemma":[0.0001026609,0.00008293617,0.0001121835,0.0001244807,0.0001488179,0.00000309792,0.0001832191,0.0005469384,0.00001130912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001175952,"about_ca_system_score_gemma":0.00009461845,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001157778,"about_ca_topic_score_gemma":0.00005927855,"domain_scores_codex":[0.999172,0.00006097632,0.0001549691,0.0002360059,0.0001953787,0.0001807236],"domain_scores_gemma":[0.999153,0.00001691715,0.00009913158,0.0005329511,0.0001448927,0.00005315394],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001382524,0.00006187727,0.05764386,0.00001959593,0.00007258605,0.000002333694,0.0003867603,0.000002475078,0.9410365,0.00002705949,0.0005215201,0.00008713079],"study_design_scores_gemma":[0.000253972,0.0001182138,0.469094,0.00001452604,0.00001944711,0.000003870242,0.00004019563,0.000008337331,0.5255502,0.00005149651,0.004766762,0.00007895739],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945112,0.0008441429,0.00002225804,0.00008779631,0.0001077495,0.0001479323,0.0001746695,0.00000419336,0.004100075],"genre_scores_gemma":[0.9984482,0.00005590586,0.0008058362,0.0001265123,0.0000887394,0.000002420159,0.0000702941,0.00001604644,0.0003860818],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4154863,"threshold_uncertainty_score":0.5740252,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0130155493657468,"score_gpt":0.2549482794978566,"score_spread":0.2419327301321098,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}