{"id":"W1992314814","doi":"10.1016/j.anaerobe.2014.06.007","title":"Phylogeny and molecular signatures for the phylum Fusobacteria and its distinct subclades","year":2014,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Fusobacteria; Phylum; Biology; Phylogenetic tree; Phylogenetics; Evolutionary biology; Clade; Internal transcribed spacer; Genetics; 16S ribosomal RNA; Gene; Proteobacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002048095,0.00009867326,0.00008444415,0.00001084485,0.0001434455,0.00007375632,0.00009848138,0.00007893058,0.000007532218],"category_scores_gemma":[0.0003407783,0.00007519114,0.00003528788,0.00002826865,0.00006138485,0.000003414644,0.00006645681,0.00004058911,0.000001103412],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000001759038,"about_ca_system_score_gemma":0.000008769632,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001194865,"about_ca_topic_score_gemma":0.00005972561,"domain_scores_codex":[0.9994116,0.00004660828,0.0001097049,0.0002597156,0.00003989535,0.0001324851],"domain_scores_gemma":[0.9996005,0.00004915079,0.00004741097,0.0001943998,0.00006075753,0.00004783951],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002028126,0.000009814217,0.001002266,0.0000203388,0.00001824136,1.213397e-7,0.00002094918,0.000001052689,0.9946097,0.0008320216,0.0003284973,0.003136696],"study_design_scores_gemma":[0.0010518,0.0003919386,0.3208998,0.00002037926,0.00009341297,0.00001102046,0.0001047581,0.002337506,0.5972998,0.0009351242,0.07636984,0.0004845798],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967512,0.0008857775,0.001514837,0.0003952477,0.0001046364,0.0002036369,0.00001517766,0.00001103031,0.0001184762],"genre_scores_gemma":[0.998879,0.00008352091,0.0002346182,0.0003630552,0.0001560121,0.00002404453,0.00005776584,0.00001263104,0.0001893655],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3973099,"threshold_uncertainty_score":0.3066206,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01017941156256743,"score_gpt":0.2427544229626749,"score_spread":0.2325750114001075,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}