{"id":"W1992696418","doi":"10.1128/jcm.01612-08","title":"Comparison of <i>Neisseria gonorrhoeae</i> Multiantigen Sequence Typing and <i>porB</i> Sequence Analysis for Identification of Clusters of <i>N. gonorrhoeae</i> Isolates","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; University of Saskatchewan","funders":"","keywords":"Neisseria gonorrhoeae; Typing; Biology; Neisseriaceae; Sequence analysis; Microbiology; Sequence (biology); Molecular epidemiology; Genetics; Neisseria; Virology; DNA; Genotype; Bacteria; Gene; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001038781,0.0002750034,0.0002512881,0.001172639,0.0002011969,0.0004057563,0.0002379212,0.0003702604,0.0007881412],"category_scores_gemma":[0.002962429,0.0001405247,0.0003303272,0.0005858311,0.000196884,0.0003259009,0.000287724,0.0002121423,0.0003412387],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001805258,"about_ca_system_score_gemma":0.000208388,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008383963,"about_ca_topic_score_gemma":0.001905464,"domain_scores_codex":[0.9990274,0.0003831977,0.00009536475,0.0001273486,0.0002631885,0.0001035073],"domain_scores_gemma":[0.9977036,0.00131182,0.0002273166,0.0001172183,0.0004302561,0.0002098273],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003537863,0.0006677446,0.1456196,0.0007023507,0.0002013221,0.00035364,0.0009459228,0.0009456035,0.7836811,0.0003332361,0.0002846214,0.06272709],"study_design_scores_gemma":[0.0001208679,0.006261018,0.7855818,0.0001276021,0.0003154359,0.0042854,0.0008668319,0.007318468,0.1912358,0.00031016,0.003524028,0.00005271581],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962327,0.0004900318,0.001824462,0.00003103761,0.00001435685,0.00003034822,0.0001684019,0.00001167322,0.001196976],"genre_scores_gemma":[0.9917658,0.0003785442,0.006615849,0.00003945731,0.000009877751,0.00002742967,0.0008781928,0.000007834337,0.0002768899],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001172639,"threshold_uncertainty_score":0.005493641,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1471935271232993,"score_gpt":0.4441242730494814,"score_spread":0.2969307459261821,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}