{"id":"W1992709794","doi":"10.1002/prot.22272","title":"Trapping open and closed forms of FitE—A group III periplasmic binding protein","year":2008,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Biotechnology Research Institute; McGill University","funders":"Biological and Environmental Research; Basic Energy Sciences; National Center for Research Resources; Canadian Institutes of Health Research; National Institutes of Health; U.S. Department of Energy","keywords":"Periplasmic space; Chemistry; Crystallography; Stereochemistry; Biochemistry; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009439867,0.0001821184,0.0002134521,0.00008622235,0.0002045476,0.00004725371,0.0001546894,0.0003092708,0.00001791819],"category_scores_gemma":[0.00002211218,0.0001410034,0.00003603817,0.000116179,0.0001928501,0.0000225048,0.0002625999,0.0001251363,5.755444e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006761318,"about_ca_system_score_gemma":0.00003904329,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001185502,"about_ca_topic_score_gemma":0.00002639685,"domain_scores_codex":[0.9991584,0.0000145636,0.0003409341,0.0001951845,0.00009490636,0.0001960269],"domain_scores_gemma":[0.9994735,0.000002636917,0.0002059214,0.0002009481,0.00005033299,0.00006666679],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002110425,0.00001611051,0.000408014,0.0001170306,0.00004210745,3.905039e-7,0.0001082001,8.632344e-7,0.9852124,0.0005139192,0.00004218985,0.01332776],"study_design_scores_gemma":[0.003150915,0.002322734,0.005022781,0.00008228176,0.00003894108,0.0002224396,0.0005221957,0.000581874,0.9741318,0.0007610348,0.01265717,0.0005057987],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961162,0.0001310842,0.002331642,0.00008164049,0.00008670943,0.000897815,0.00004890475,0.00001523303,0.0002908355],"genre_scores_gemma":[0.9884738,0.0002012276,0.01091189,0.00007151282,0.00005265715,0.00002400941,0.000127681,0.00001243014,0.0001248343],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01282196,"threshold_uncertainty_score":0.574995,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009809252533767281,"score_gpt":0.2061277104495216,"score_spread":0.1963184579157543,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}