{"id":"W1992896023","doi":"10.1093/nar/gkt998","title":"Hox in motion: tracking HoxA cluster conformation during differentiation","year":2013,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Chromatin; Biology; Chromosome conformation capture; CTCF; Hox gene; Gene silencing; Cohesin; Polycomb-group proteins; Genetics; Genomic organization; Epigenomics; Computational biology; DNA methylation; Transcription factor; Genome; Gene; Enhancer; Gene expression; Repressor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007779347,0.0001022387,0.0001011577,0.0001541957,0.000118247,0.0001890262,0.000174254,0.0001707554,0.0008557159],"category_scores_gemma":[0.0001467624,0.0001266657,0.00007521205,0.0001805638,0.0001405767,0.0001328911,0.0002139675,0.0002329357,0.000126561],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002682104,"about_ca_system_score_gemma":0.0001671397,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002177125,"about_ca_topic_score_gemma":0.004400184,"domain_scores_codex":[0.9999701,0.00000375254,7.162312e-7,0.000009930716,0.000009982409,0.000005518954],"domain_scores_gemma":[0.9999619,0.00001222589,0.000006247883,0.000006300351,0.000006038361,0.000007365696],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009393381,0.00001631832,0.004562813,0.00003072697,0.000008492629,0.00005273397,0.00008950201,0.009093548,0.9734978,0.0006004796,0.0001930533,0.01176072],"study_design_scores_gemma":[0.00001839525,0.0001450308,0.06475489,0.000007289111,0.0000185377,0.0002203512,0.0001070432,0.2936519,0.6376833,0.0005304252,0.002834411,0.00002850011],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.956448,0.0001595051,0.04142924,0.00007769416,0.000009533893,0.00001724239,0.0003985925,0.0002584138,0.001201798],"genre_scores_gemma":[0.9714945,0.0001663281,0.02680406,0.00001891009,0.000003449285,0.00001946408,0.0003540427,0.00003614056,0.00110313],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002177125,"threshold_uncertainty_score":0.004328907,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01855782798339469,"score_gpt":0.2820504038422429,"score_spread":0.2634925758588483,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}