{"id":"W1992896023","doi":"10.1093/nar/gkt998","title":"Hox in motion: tracking HoxA cluster conformation during differentiation","year":2013,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Chromatin; Biology; Chromosome conformation capture; CTCF; Hox gene; Gene silencing; Cohesin; Polycomb-group proteins; Genetics; Genomic organization; Epigenomics; Computational biology; DNA methylation; Transcription factor; Genome; Gene; Enhancer; Gene expression; Repressor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003253096,0.00008767237,0.00008313694,0.0001252289,0.0001246335,0.00008710609,0.0001818919,0.0001453158,0.000182453],"category_scores_gemma":[0.00006591259,0.00008687939,0.00003692847,0.0001296211,0.00004960065,0.00001967345,0.0001540003,0.000194102,0.0001159598],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006573715,"about_ca_system_score_gemma":0.00002540759,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005334146,"about_ca_topic_score_gemma":0.00005025258,"domain_scores_codex":[0.9989395,0.00009186839,0.0002130978,0.000204869,0.0002342632,0.0003164007],"domain_scores_gemma":[0.9994695,0.00001074546,0.00003988292,0.0002481833,0.0001734799,0.00005821809],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004274401,0.0001009966,0.03176916,0.0001035598,0.00002160759,0.000001366333,0.0005689039,0.0005086693,0.948621,0.0001975211,0.000905233,0.0171592],"study_design_scores_gemma":[0.001522304,0.0001498312,0.873002,0.00003953297,0.000003234376,0.00001332954,0.0007419905,0.03850429,0.08405513,0.0007944012,0.0009054656,0.0002684792],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963679,0.00005388311,0.0006447261,0.0002809947,0.00005515592,0.0003146708,0.000003156335,0.00000862352,0.002270891],"genre_scores_gemma":[0.9988787,0.0000980604,0.0002384098,0.00003291704,0.0001132329,0.00004636306,0.00009965095,0.00001806549,0.0004746076],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8645659,"threshold_uncertainty_score":0.3542839,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01855782798339469,"score_gpt":0.2820504038422429,"score_spread":0.2634925758588483,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}