{"id":"W1993016819","doi":"10.4161/mge.20498","title":"Diversity of integrating conjugative elements in actinobacteria","year":2012,"lang":"en","type":"article","venue":"Mobile Genetic Elements","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Academy of Finland; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Actinobacteria; Plasmid; Biology; Bacterial conjugation; DNA; Bacteria; Streptomyces; Genetics; Horizontal gene transfer; Gene; Secretion; Bacterial genetics; Computational biology; Microbiology; Escherichia coli; Biochemistry; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004092927,0.0003245182,0.000457341,0.001986841,0.0005434984,0.0009917193,0.000347301,0.00042356,0.0008822704],"category_scores_gemma":[0.000935786,0.0002348363,0.0003367879,0.001830542,0.0003704673,0.000402188,0.0009993317,0.0005415726,0.0006837907],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003028888,"about_ca_system_score_gemma":0.0002860664,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004019193,"about_ca_topic_score_gemma":0.0004848006,"domain_scores_codex":[0.999471,0.00006282632,0.00006333066,0.0001434424,0.0001655004,0.00009383197],"domain_scores_gemma":[0.9994705,0.0001065505,0.0001107921,0.0001139791,0.00008183987,0.0001162602],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007098821,0.000165129,0.07897969,0.0003499313,0.0001894033,0.001162014,0.0008963112,0.0009891039,0.7496203,0.00404211,0.0002686706,0.1626274],"study_design_scores_gemma":[0.0001110408,0.001258016,0.6487408,0.0004777209,0.0007130584,0.0180585,0.002051355,0.003314218,0.226334,0.01201894,0.08670858,0.0002137575],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9820409,0.00371095,0.005973823,0.0001045034,0.00001601783,0.00005121045,0.0006882388,0.0002047586,0.007209703],"genre_scores_gemma":[0.9896871,0.002029366,0.005668181,0.00008323928,0.00001626519,0.00002972452,0.001125268,0.00003488663,0.001325946],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001986841,"threshold_uncertainty_score":0.002951503,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01035552327856251,"score_gpt":0.251157036174694,"score_spread":0.2408015128961315,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}