{"id":"W1993304014","doi":"10.1093/nar/gkm483","title":"A search for structurally similar cellular internal ribosome entry sites","year":2007,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Children's Hospital of Eastern Ontario","funders":"Canadian Institutes of Health Research","keywords":"Internal ribosome entry site; Biology; XIAP; Translation (biology); Eukaryotic translation; Untranslated region; Cell biology; Inhibitor of apoptosis; Ribosome; Computational biology; Genetics; Messenger RNA; Virology; RNA; Gene; Apoptosis; Programmed cell death; Caspase","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00382844,0.0002067784,0.0003628844,0.0009413225,0.0006042192,0.0001181807,0.0004421018,0.0003220423,0.001564075],"category_scores_gemma":[0.0006148721,0.0001710965,0.0002219176,0.0008960107,0.0007473028,0.0001950686,0.0003886257,0.001752327,0.0004562997],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003565212,"about_ca_system_score_gemma":0.0002826904,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001225754,"about_ca_topic_score_gemma":0.00001691246,"domain_scores_codex":[0.9962104,0.0001975014,0.0004136658,0.0005392965,0.001097521,0.001541626],"domain_scores_gemma":[0.9971945,0.0005422562,0.00003281128,0.0006326343,0.001200682,0.0003970641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002346596,0.0003326116,0.08812727,0.0002333415,0.0002655369,0.0002271267,0.0004722765,0.00000255399,0.8660762,0.002069185,0.008021177,0.03182613],"study_design_scores_gemma":[0.006761461,0.007031922,0.1234897,0.0002302517,0.00005761049,0.0003271159,0.002918824,0.002259798,0.7421573,0.001691471,0.1125645,0.0005100449],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.98066,0.0008296957,0.002115407,0.002201351,0.0001545061,0.001160041,0.00002472158,0.00009511296,0.01275919],"genre_scores_gemma":[0.9868184,0.0002051759,0.001841443,0.0001547055,0.0005851797,0.00004930106,0.00006858499,0.00006387087,0.01021328],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1239188,"threshold_uncertainty_score":0.9993486,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06625511264754946,"score_gpt":0.3952927746255743,"score_spread":0.3290376619780249,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}