{"id":"W1993548583","doi":"10.1128/mbio.00342-10","title":"Genome Variation in Cryptococcus gattii, an Emerging Pathogen of Immunocompetent Hosts","year":2011,"lang":"en","type":"article","venue":"mBio","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":215,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research; University of British Columbia; Island Health; BC Centre for Disease Control; BC Cancer Agency; Canada's Michael Smith Genome Sciences Centre","funders":"National Human Genome Research Institute; Medical Research Council; National Institutes of Health; British Columbia Centre for Disease Control; Genome British Columbia; National Institute of Allergy and Infectious Diseases; National Health and Medical Research Council; Broad Institute; Canadian Institutes of Health Research; Genome Canada; Howard Hughes Medical Institute","keywords":"Cryptococcus gattii; Biology; Genome; Cryptococcus neoformans; Genetics; Cryptococcosis; Virulence; Genotype; Phylogenetic tree; Gene; Microbiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001359537,0.00006323033,0.0001527193,0.0001006741,0.00003506097,0.000002551564,0.00003148459,0.00003354129,0.0002169135],"category_scores_gemma":[0.0000179431,0.00005463337,0.00003901818,0.0001318145,0.00002075547,0.00004858352,0.00002382134,0.00006603341,0.00001653018],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003617797,"about_ca_system_score_gemma":0.00001705501,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005571743,"about_ca_topic_score_gemma":0.00007206561,"domain_scores_codex":[0.9995081,0.00002175965,0.0001859334,0.0001082383,0.00006653678,0.0001094644],"domain_scores_gemma":[0.9996971,0.000007697664,0.00004791365,0.0001582978,0.00005982822,0.00002909056],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008993076,0.0005424171,0.2018429,0.0000574238,0.00007378648,0.00002111448,0.009223678,0.000006145897,0.785041,0.001018586,0.00001077847,0.002072287],"study_design_scores_gemma":[0.0004644798,0.000317238,0.9957184,0.0000297526,0.00002244739,0.000005052183,0.0002450439,0.00005071108,0.002471631,0.0001575961,0.0004599445,0.000057713],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930969,0.0002841034,0.0001462793,0.00003719384,0.0001148802,0.0002344413,0.000005216267,0.00002068781,0.0060603],"genre_scores_gemma":[0.9987418,0.0000474951,0.00101431,0.00003137224,0.00003870267,0.00002626443,0.000008302706,0.000007164402,0.00008459514],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7938755,"threshold_uncertainty_score":0.2375051,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04649525621467164,"score_gpt":0.2805821288130755,"score_spread":0.2340868725984038,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}