{"id":"W1993768789","doi":"10.1128/iai.73.10.6407-6418.2005","title":"Comparative Genomic Analysis of<i>Chlamydia trachomatis</i>Oculotropic and Genitotropic Strains","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":219,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Chlamydia trachomatis; Lymphogranuloma venereum; Virology; Genome; Sexually transmitted disease; Genetics; Single-nucleotide polymorphism; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002428532,0.0001382931,0.000383757,0.0005303169,0.0003104428,0.00002467596,0.00006094105,0.0001307691,0.0005082331],"category_scores_gemma":[0.00006276991,0.0001288132,0.00009302695,0.0005202158,0.0004275708,0.0002039436,0.00006143538,0.0004127572,0.00005633774],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005370522,"about_ca_system_score_gemma":0.00003151611,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001432986,"about_ca_topic_score_gemma":0.0006436819,"domain_scores_codex":[0.9988632,0.0004079024,0.0002800102,0.0002277015,0.00003384236,0.0001874011],"domain_scores_gemma":[0.9993346,0.0001244139,0.0001104884,0.0002749295,0.0001282644,0.00002733187],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004034771,0.0003381394,0.398661,0.00001940762,0.002605699,2.803636e-7,0.001645402,0.0003082591,0.5731334,0.0004520169,0.00006929466,0.02272682],"study_design_scores_gemma":[0.0005143192,0.0001146962,0.9755263,0.000004207337,0.0003828032,0.00003211066,0.0001345517,0.0001065236,0.0201864,0.00002773437,0.00285849,0.000111806],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957268,0.001810103,0.0004217913,0.00005448574,0.0001127308,0.0002065833,0.00002680343,0.00004729654,0.001593361],"genre_scores_gemma":[0.9988469,0.0005853912,0.00007940318,0.0000172038,0.00002537361,0.00001650802,0.0000467176,0.000006464747,0.0003759997],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5768654,"threshold_uncertainty_score":0.5564796,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03055585670781148,"score_gpt":0.3146210406300704,"score_spread":0.2840651839222589,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}