{"id":"W1993768789","doi":"10.1128/iai.73.10.6407-6418.2005","title":"Comparative Genomic Analysis of<i>Chlamydia trachomatis</i>Oculotropic and Genitotropic Strains","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":219,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Chlamydia trachomatis; Lymphogranuloma venereum; Virology; Genome; Sexually transmitted disease; Genetics; Single-nucleotide polymorphism; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001248449,0.0002938697,0.0002808256,0.001025319,0.0002843447,0.0004162079,0.0002294137,0.0002752573,0.00109776],"category_scores_gemma":[0.0004950211,0.0001206368,0.0004972988,0.001023474,0.0002005558,0.00009149548,0.0003713252,0.0003807774,0.0002620439],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003076568,"about_ca_system_score_gemma":0.0002595584,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004962203,"about_ca_topic_score_gemma":0.004062246,"domain_scores_codex":[0.999756,0.00002587047,0.00001601238,0.00007545919,0.00005227205,0.00007430263],"domain_scores_gemma":[0.9995955,0.00008635181,0.000130852,0.00002728442,0.00008153395,0.00007859033],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004054672,0.00006996741,0.009980938,0.000155126,0.00006354404,0.0002895865,0.0002750447,0.00009160662,0.9825287,0.0001348017,0.0001293617,0.005875717],"study_design_scores_gemma":[0.0000292744,0.0008485557,0.901459,0.00005765563,0.000245447,0.002067008,0.0007026707,0.0007770346,0.08635874,0.0001137572,0.007315793,0.00002507038],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992853,0.0007012773,0.0007537061,0.00005359509,0.00001475581,0.0000354589,0.003840631,0.00002293122,0.001724531],"genre_scores_gemma":[0.9839604,0.0005135228,0.002359976,0.0001701162,0.00001717813,0.00004138897,0.01207562,0.00002983059,0.0008320448],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004962203,"threshold_uncertainty_score":0.009866655,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03055585670781148,"score_gpt":0.3146210406300704,"score_spread":0.2840651839222589,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}