{"id":"W1993858609","doi":"10.1016/j.micinf.2006.12.016","title":"Citrobacter rodentium virulence in mice associates with bacterial load and the type III effector NleE","year":2007,"lang":"en","type":"article","venue":"Microbes and Infection","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University; University of British Columbia; Health Canada; Canada's Michael Smith Genome Sciences Centre","funders":"","keywords":"Citrobacter rodentium; Microbiology; Virulence; Biology; Effector; Type three secretion system; Pathogen; Colonisation; Mutant; Bacteria; Citrobacter; Secretion; Enterobacteriaceae; Escherichia coli; Wild type; Pathogenicity island; Colonization; Gene; Immunology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004500187,0.00008678564,0.00009850026,0.000021228,0.00008953544,0.00004404117,0.00003124613,0.00006516397,0.000004729216],"category_scores_gemma":[0.00007599005,0.00005579527,0.00001701837,0.00007830679,0.0001340877,0.000007298125,0.00008297568,0.00008397268,0.00000154331],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002108265,"about_ca_system_score_gemma":0.00001963874,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006921676,"about_ca_topic_score_gemma":0.003060377,"domain_scores_codex":[0.9994709,0.0000571143,0.00008666784,0.0001661518,0.00005478139,0.0001644129],"domain_scores_gemma":[0.9997734,0.00003346955,0.00003616173,0.00006424914,0.00006959874,0.00002314856],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006994141,0.00002221488,0.08431318,0.00001736306,0.00003793824,7.982118e-7,0.00008993351,9.068111e-7,0.9139851,0.00000835656,0.0001737923,0.0006510534],"study_design_scores_gemma":[0.003880371,0.0005835758,0.759725,0.00004672706,0.00003073725,0.00002182338,0.00005241764,0.00002192754,0.2186396,0.00001664646,0.01677504,0.0002061009],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984552,0.0008421898,0.00009323598,0.00006315533,0.00009916615,0.0001711378,0.000001981208,0.000005034451,0.0002688896],"genre_scores_gemma":[0.9981073,0.001429243,0.0000455421,0.00007009191,0.00013257,0.000008194525,0.00000872601,0.000006779683,0.0001915302],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6953455,"threshold_uncertainty_score":0.2275265,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003748150139325916,"score_gpt":0.2296725498645281,"score_spread":0.2259243997252022,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}