{"id":"W1994285578","doi":"10.1016/s1055-7903(03)00134-9","title":"Are Ichthyosporea animals or fungi? Bayesian phylogenetic analysis of elongation factor 1α of Ichthyophonus irregularis","year":2003,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Infectious Diseases and Mycology","field":"Veterinary","cited_by":21,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetic tree; Phylogenetics; Maximum parsimony; Elongation factor; Genetics; Sequence analysis; Ribosomal RNA; Evolutionary biology; Rhizophagus irregularis; Gene; Clade; RNA; Bacteria; Symbiosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001535435,0.0002375222,0.0005309822,0.0004336592,0.00008344417,0.00001325095,0.0001024985,0.0002125967,0.0002113225],"category_scores_gemma":[0.000109427,0.0002269336,0.000261992,0.0008781032,0.0001330024,0.00002136002,0.00004618671,0.00007513797,0.00000285891],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006578051,"about_ca_system_score_gemma":0.00007351628,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001310785,"about_ca_topic_score_gemma":0.0001141534,"domain_scores_codex":[0.9983173,0.0002358467,0.0004989788,0.0004011978,0.0002472614,0.0002994374],"domain_scores_gemma":[0.9986293,0.00004637639,0.0005297932,0.0004178883,0.0002602884,0.0001163985],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003224042,0.0002643415,0.2062111,0.0001228378,0.001165572,0.00006214824,0.0001202682,0.001918514,0.7870231,0.001952987,0.00001909526,0.0008176227],"study_design_scores_gemma":[0.0005508047,0.001046193,0.9564829,0.00001778946,0.001628646,0.00003799441,0.0001158735,0.003592161,0.03478823,0.001378204,0.00009419259,0.0002670092],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.970221,0.00382538,0.02509223,0.000009637203,0.0001027595,0.0002920499,0.0001790482,0.00001773549,0.0002600938],"genre_scores_gemma":[0.9986023,0.0001453532,0.001097237,0.00003262473,0.00001825237,0.00001961441,0.00003653512,0.00002996606,0.00001817089],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7522348,"threshold_uncertainty_score":0.9254085,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01962482553654723,"score_gpt":0.2751268954410955,"score_spread":0.2555020699045483,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}