{"id":"W1994317716","doi":"10.1371/journal.pcbi.1000449","title":"Small RNAs Originated from Pseudogenes: cis- or trans-Acting?","year":2009,"lang":"en","type":"article","venue":"PLoS Computational Biology","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Albert Einstein College of Medicine, Yeshiva University; Yeshiva University; National Human Genome Research Institute; Yale University","keywords":"Pseudogene; Biology; Genetics; Gene; Small nucleolar RNA; Genome; Antisense RNA; RNA; Long non-coding RNA; Non-coding RNA; Small interfering RNA; Dicer","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006213253,0.0001395987,0.0001496427,0.0000758145,0.00009945426,0.00002442065,0.0002015066,0.0001672575,0.0002439079],"category_scores_gemma":[0.00008617849,0.0001150657,0.00006823937,0.0001117359,0.00005471719,0.00000431202,0.0000254665,0.0001366685,0.0000702244],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001651244,"about_ca_system_score_gemma":0.0001109332,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003641673,"about_ca_topic_score_gemma":0.00004065304,"domain_scores_codex":[0.9990474,0.00009097168,0.000200712,0.0003426115,0.00008148351,0.000236802],"domain_scores_gemma":[0.999463,0.0001268831,0.00005358921,0.00012735,0.0001505105,0.00007873413],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007733892,0.0002069817,0.001122777,0.000003777306,0.0001599743,0.00001669407,0.00003758514,0.0006967104,0.9858425,0.0003747242,0.001189962,0.009574879],"study_design_scores_gemma":[0.003532363,0.004540962,0.01361871,0.00007029563,0.00009786936,0.0002261322,0.0001504399,0.02792452,0.6901059,0.01077134,0.2476794,0.001282147],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.973571,0.0002734469,0.02261321,0.0007815898,0.0001770951,0.0001698839,0.0002300047,0.00004239236,0.002141357],"genre_scores_gemma":[0.991497,0.00006686745,0.004336383,0.000626274,0.0003112155,0.00001171727,0.00262239,0.00001019363,0.0005179418],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2957367,"threshold_uncertainty_score":0.4692244,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06380355512863457,"score_gpt":0.3222510642468046,"score_spread":0.25844750911817,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}