{"id":"W1994317716","doi":"10.1371/journal.pcbi.1000449","title":"Small RNAs Originated from Pseudogenes: cis- or trans-Acting?","year":2009,"lang":"en","type":"article","venue":"PLoS Computational Biology","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Albert Einstein College of Medicine, Yeshiva University; Yeshiva University; National Human Genome Research Institute; Yale University","keywords":"Pseudogene; Biology; Genetics; Gene; Small nucleolar RNA; Genome; Antisense RNA; RNA; Long non-coding RNA; Non-coding RNA; Small interfering RNA; Dicer","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000493378,0.0005395516,0.0005578668,0.000432399,0.0003310857,0.0009172453,0.000330868,0.0008480407,0.002163772],"category_scores_gemma":[0.0008367096,0.0002918903,0.0006333415,0.0004822846,0.0006835037,0.0008693156,0.0003811834,0.0007301519,0.001591196],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002990271,"about_ca_system_score_gemma":0.0002632544,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002233333,"about_ca_topic_score_gemma":0.0004869379,"domain_scores_codex":[0.9995696,0.00006854894,0.00003417119,0.0001512581,0.000120459,0.00005594748],"domain_scores_gemma":[0.9991043,0.0002586849,0.0002487947,0.0001227265,0.0001763649,0.00008907674],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0003005487,0.00003579673,0.01354834,0.0007488437,0.00005713393,0.001947326,0.0003629237,0.0001290989,0.9506966,0.0038895,0.000370879,0.02791302],"study_design_scores_gemma":[0.00005444749,0.0007584845,0.06068137,0.0002551843,0.0003861798,0.01700265,0.0009138535,0.002552511,0.8411532,0.005012648,0.07113871,0.00009074699],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8827434,0.0479848,0.04785063,0.002629531,0.000869034,0.0001062296,0.001186752,0.0007244098,0.01590517],"genre_scores_gemma":[0.9659932,0.01017934,0.01368875,0.001392012,0.0003723036,0.00007064721,0.001602242,0.0001441523,0.006557245],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002163772,"threshold_uncertainty_score":0.007238507,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06380355512863457,"score_gpt":0.3222510642468046,"score_spread":0.25844750911817,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}