{"id":"W1994392532","doi":"10.1371/journal.pone.0024249","title":"Selection in Coastal Synechococcus (Cyanobacteria) Populations Evaluated from Environmental Metagenomes","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"AIDS Vancouver","funders":"National Science Foundation","keywords":"Metagenomics; Biology; Negative selection; Population; Computational biology; Genetics; Gene; Genome; Synechococcus; Selection (genetic algorithm); Cyanobacteria; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008625975,0.0004597172,0.0003993868,0.001073947,0.0004004813,0.0008863976,0.0002242014,0.0003392735,0.0003181864],"category_scores_gemma":[0.001913805,0.0002220911,0.0004266216,0.001157474,0.0002274785,0.0003632632,0.0007944351,0.0003213805,0.0001791198],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002907942,"about_ca_system_score_gemma":0.0002426783,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001201569,"about_ca_topic_score_gemma":0.001930936,"domain_scores_codex":[0.9993137,0.00009448254,0.00008600469,0.0002524482,0.0001971256,0.00005621144],"domain_scores_gemma":[0.9994568,0.0001395156,0.0001186124,0.00003833595,0.0001780294,0.00006863644],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003626117,0.00007525554,0.1038142,0.0001548438,0.0001562423,0.0001610759,0.0005406997,0.001184384,0.8846325,0.00009004075,0.00005806808,0.008770131],"study_design_scores_gemma":[0.00002723659,0.001146587,0.7296659,0.00003506669,0.000462659,0.0006995235,0.001235824,0.009639326,0.254793,0.0003350076,0.001880936,0.0000788865],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977378,0.0001368964,0.001235491,0.000008959142,0.00000279868,0.00001848454,0.0006423811,0.00002249561,0.000194759],"genre_scores_gemma":[0.9880174,0.0002716554,0.006735425,0.00006197394,0.000006469865,0.00008868734,0.004510876,0.00004861084,0.0002588843],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001201569,"threshold_uncertainty_score":0.004561901,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1059825317067496,"score_gpt":0.2285112453156773,"score_spread":0.1225287136089278,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}