{"id":"W1994819810","doi":"10.1371/journal.pone.0078423","title":"Association Analysis Identifies Melampsora ×columbiana Poplar Leaf Rust Resistance SNPs","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bioenergy crop production and management","field":"Agricultural and Biological Sciences","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"Natural Resources Canada; University of British Columbia","funders":"Genome British Columbia; Genome Canada","keywords":"Biology; Rust (programming language); Single-nucleotide polymorphism; Plant disease resistance; Gene; Genetics; Genome-wide association study; Transcriptome; Genetic association; Genotype; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002224439,0.0000885682,0.0001868682,0.00002633446,0.000236637,0.000225696,0.000167451,0.00007493413,0.003516142],"category_scores_gemma":[0.00008525421,0.00004361395,0.00009726232,0.0007601429,0.00002394451,0.0002238237,0.00005478796,0.00007763071,0.0004403778],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007022668,"about_ca_system_score_gemma":0.000001932769,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001279553,"about_ca_topic_score_gemma":0.01133453,"domain_scores_codex":[0.9988356,0.00006762784,0.0001907159,0.0002959419,0.0003917297,0.00021836],"domain_scores_gemma":[0.9995075,0.00003420161,0.0001413894,0.00009087618,0.0001634977,0.00006255425],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003351016,0.002937038,0.09780702,0.0001019918,0.007266849,0.000004533526,0.0002700323,0.00002146024,0.6340249,0.001736144,0.2360708,0.01972578],"study_design_scores_gemma":[0.0002203171,0.00009429972,0.8498085,0.00004652106,0.001753025,1.176946e-7,0.0008097455,0.0001432435,0.0317359,0.001495344,0.1133138,0.0005791615],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9700387,0.00018333,0.000003148567,0.0258468,0.00006452285,0.0002005689,0.00001478191,0.0001150652,0.003533052],"genre_scores_gemma":[0.876754,0.000193683,0.0003445554,0.0004421565,0.0002228857,0.00005563713,0.0001062699,9.063253e-7,0.1218799],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7520015,"threshold_uncertainty_score":0.9973948,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02494017064539557,"score_gpt":0.1814550124416262,"score_spread":0.1565148417962307,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}