{"id":"W1995224771","doi":"10.1093/nar/gkq1069","title":"RBPDB: a database of RNA-binding specificities","year":2010,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":702,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Human Genome Research Institute; Canadian Institutes of Health Research","keywords":"Biology; RNA; RNA-binding protein; Binding site; Computational biology; Immunoprecipitation; Database; Genetics; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001680598,0.003911023,0.004645855,0.006882086,0.001557349,0.004316182,0.005517594,0.002173446,0.04827996],"category_scores_gemma":[0.004155669,0.0020342,0.001870105,0.008203875,0.0004393334,0.002690054,0.002508463,0.002470199,0.07964246],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009811326,"about_ca_system_score_gemma":0.002492808,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002884258,"about_ca_topic_score_gemma":0.003112217,"domain_scores_codex":[0.9984329,0.0002853532,0.0002953565,0.0004323255,0.000363762,0.0001901934],"domain_scores_gemma":[0.9985056,0.0004262126,0.0002435517,0.0003691646,0.0002548897,0.0002006184],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002902174,0.0003682976,0.005767436,0.01243055,0.0009125678,0.001187146,0.0005330065,0.005937997,0.09605417,0.01113021,0.7542261,0.1085503],"study_design_scores_gemma":[0.0003779985,0.0001544116,0.006015352,0.0005359303,0.0003826282,0.001460618,0.0001564488,0.005231183,0.01956307,0.01021865,0.9556708,0.0002328399],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.008339215,0.006738002,0.02784004,0.0002393024,0.000135421,0.0001919364,0.899029,0.04431091,0.01317611],"genre_scores_gemma":[0.008349936,0.002256113,0.02252309,0.0001355836,0.00002967874,0.0002378522,0.9617931,0.00250996,0.002164725],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.04827996,"threshold_uncertainty_score":0.1615126,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04858824812350159,"score_gpt":0.3572112268112195,"score_spread":0.3086229786877179,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}