{"id":"W1995431222","doi":"10.1097/rti.0b013e318149e808","title":"Organizing Pneumonia as a Manifestation of Pneumocystis jiroveci Immune Reconstitution Syndrome in HIV-positive Patients","year":2008,"lang":"en","type":"article","venue":"Journal of Thoracic Imaging","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver General Hospital; St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Medicine; Pneumonia; Immune system; Immune reconstitution inflammatory syndrome; Lung; Immunology; Pneumocystis pneumonia; Pneumocystis jirovecii; Human immunodeficiency virus (HIV); Antiretroviral therapy; Viral load; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000355235,0.0002348917,0.0006400489,0.0007609515,0.0001240892,0.00001892199,0.0001084616,0.00006830238,0.0000358404],"category_scores_gemma":[0.000298583,0.0002134678,0.0002033482,0.000507806,0.0001214152,0.0005365646,0.00003958286,0.0004212013,0.00004182831],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000590837,"about_ca_system_score_gemma":0.0002726935,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006102463,"about_ca_topic_score_gemma":0.000002974092,"domain_scores_codex":[0.9976835,0.0001257906,0.001129638,0.000221739,0.0005608951,0.0002784886],"domain_scores_gemma":[0.9980776,0.000106768,0.000954,0.0001970671,0.0005087148,0.0001558864],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001781328,0.002013658,0.6278188,0.0002969471,0.0003400022,0.01614624,0.002255143,0.0001982767,0.3056594,0.0000866007,0.00003649892,0.0433671],"study_design_scores_gemma":[0.002317119,0.0007370912,0.9120097,0.001424569,0.0002054344,0.04630853,0.0002993438,0.0003021926,0.03603572,0.0001160064,0.00004956797,0.0001947628],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966338,0.0003676021,0.0006070794,0.0007107123,0.0004227156,0.0003087791,0.00001064705,0.00002289908,0.0009157888],"genre_scores_gemma":[0.9982125,0.0001910819,0.001273493,0.00008918634,0.00004625735,0.000004219949,0.00001389589,0.00003133445,0.0001381004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2841909,"threshold_uncertainty_score":0.8704966,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009232673890585602,"score_gpt":0.2726453089045808,"score_spread":0.2634126350139953,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}