{"id":"W1995478592","doi":"10.3389/fmicb.2015.00224","title":"Beyond research: a primer for considerations on using viral metagenomics in the field and clinic","year":2015,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of Windsor","keywords":"Metagenomics; Rigour; Data science; Ethical issues; Engineering ethics; Biology; Computer science; Computational biology; Engineering; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.1221315,0.001729262,0.002759132,0.00302179,0.008343839,0.01758469,0.005221815,0.03733518,0.007932971],"category_scores_gemma":[0.1069865,0.001695088,0.002596722,0.001741334,0.05313388,0.04662114,0.01551742,0.06462137,0.004652502],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005305225,"about_ca_system_score_gemma":0.0233957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003124525,"about_ca_topic_score_gemma":0.005712249,"domain_scores_codex":[0.9402302,0.04165422,0.004674547,0.002362209,0.009159532,0.001919232],"domain_scores_gemma":[0.8236787,0.1427379,0.002904869,0.006128103,0.01529944,0.009251003],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002693813,0.0003780979,0.001575634,0.00218201,0.00009760755,0.002618649,0.01630048,0.0006532156,0.002317169,0.3008594,0.5253696,0.1473787],"study_design_scores_gemma":[0.00006827166,0.0001624889,0.0002812868,0.00386228,0.00003269677,0.001719146,0.007657235,0.0002702092,0.0004211178,0.278374,0.7069997,0.0001515444],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"methods","genre_scores_codex":[0.0001834792,0.0349695,0.007294081,0.9453153,0.008866384,0.00007952855,0.00001716625,0.000079556,0.00319495],"genre_scores_gemma":[0.01384131,0.06054831,0.05980182,0.8378173,0.01900179,0.0007271814,0.00005023809,0.0003503,0.00786179],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.1221315,"threshold_uncertainty_score":0.6459007,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1014205659523849,"score_gpt":0.3696340353863447,"score_spread":0.2682134694339599,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}