{"id":"W1995962575","doi":"10.1093/nar/gks497","title":"METAGENassist: a comprehensive web server for comparative metagenomics","year":2012,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":414,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Innovates; National Institute for Nanotechnology; University of Alberta","funders":"Genome Alberta; Canadian Institutes of Health Research; Alberta Innovates; Genome Canada","keywords":"Metagenomics; Biology; Upload; Metadata; Computer science; Computational biology; World Wide Web; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007143472,0.005961365,0.004825216,0.007999569,0.001858552,0.004703338,0.007910944,0.00254725,0.04521953],"category_scores_gemma":[0.006160371,0.003591566,0.002939167,0.006318219,0.001021323,0.005537787,0.006005432,0.007101322,0.08853332],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001366733,"about_ca_system_score_gemma":0.003449507,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002153871,"about_ca_topic_score_gemma":0.001697934,"domain_scores_codex":[0.9959481,0.0008940481,0.0004913236,0.0008311617,0.001409552,0.0004258686],"domain_scores_gemma":[0.9965945,0.0007786034,0.0003937553,0.0006682665,0.0008443266,0.0007205885],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00294135,0.0005835367,0.002766518,0.004057557,0.000810929,0.0007675796,0.0006968974,0.004038081,0.06026929,0.005507258,0.7531164,0.1644446],"study_design_scores_gemma":[0.001543718,0.0005240269,0.008756191,0.001333242,0.0003587699,0.001378773,0.0002928946,0.04537753,0.06063242,0.02439362,0.8543626,0.001046118],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.00443253,0.002503323,0.1965248,0.0005868406,0.0006926205,0.001367565,0.1613478,0.622876,0.009668522],"genre_scores_gemma":[0.01299564,0.001991819,0.3462506,0.0009391215,0.0003956122,0.004365424,0.5410032,0.08357,0.008488481],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.04521953,"threshold_uncertainty_score":0.1512744,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1398697403825591,"score_gpt":0.3842816258268387,"score_spread":0.2444118854442797,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}