{"id":"W1996073383","doi":"10.3109/19401736.2010.536538","title":"The FISH-BOL collaborators' protocol","year":2011,"lang":"en","type":"article","venue":"Mitochondrial DNA","topic":"Identification and Quantification in Food","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada; Alfred P. Sloan Foundation","keywords":"Barcode; Biology; DNA barcoding; Fish <Actinopterygii>; Identification (biology); Protocol (science); Cytochrome c oxidase subunit I; Computational biology; Mitochondrial DNA; Fishery; Evolutionary biology; Gene; Genetics; Computer science; Ecology; Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001211531,0.000106107,0.00006637441,0.00002006345,0.0002900393,0.00007402465,0.000325022,0.0001077405,0.0001388387],"category_scores_gemma":[0.0001597223,0.00007917712,0.00006138298,0.0001388994,0.0001189156,0.000003944266,0.00005308063,0.00005996494,0.0001912176],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007406811,"about_ca_system_score_gemma":0.00008535298,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007090226,"about_ca_topic_score_gemma":0.00005975446,"domain_scores_codex":[0.9991081,0.0000816345,0.0002404744,0.0002645339,0.000127594,0.0001777136],"domain_scores_gemma":[0.999037,0.000008590017,0.0001085776,0.0005820158,0.0001991893,0.00006466176],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002469523,0.00009134309,0.0001859419,0.000007749484,0.00003373991,5.25285e-7,0.0001255747,2.98422e-7,0.7356391,0.00434218,0.258318,0.001008555],"study_design_scores_gemma":[0.0003025605,0.0000554791,0.0006859618,0.000001458519,0.000003719485,0.000001390959,0.00004739487,0.000002172245,0.4266288,0.00004794801,0.5721485,0.00007459184],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.3914058,0.0002147479,0.0110988,0.005860896,0.02123574,0.3116612,0.0004593995,0.0006180467,0.2574453],"genre_scores_gemma":[0.5796376,0.00005285652,0.004672331,0.002335184,0.005862608,0.3165264,0.0005173933,0.0001931552,0.09020253],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3138305,"threshold_uncertainty_score":0.322875,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02500694844978626,"score_gpt":0.2720698398634173,"score_spread":0.247062891413631,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}