{"id":"W1997102128","doi":"10.1111/j.1574-6968.1997.tb10268.x","title":"Utilization of alkaline phosphatase fusions to identify secreted proteins, including potential efflux proteins and virulence factors from Helicobacter pylori","year":2006,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria; University of British Columbia","funders":"","keywords":"Virulence; Biology; Gene; Helicobacter pylori; Efflux; Microbiology; Virulence factor; Phosphatase; Signal peptide; Genetics; Peptide sequence; Phosphorylation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003628767,0.0003761836,0.0004231974,0.0003829254,0.0001599768,0.0004523495,0.0002355217,0.0003970287,0.000688181],"category_scores_gemma":[0.0003892527,0.0002486885,0.0002912817,0.000289626,0.0003321347,0.0002828441,0.0005712427,0.000675405,0.0003489529],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002600895,"about_ca_system_score_gemma":0.0002309661,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006285952,"about_ca_topic_score_gemma":0.0007767992,"domain_scores_codex":[0.9997807,0.00004493211,0.00002128424,0.00004071114,0.00006204677,0.00005025462],"domain_scores_gemma":[0.9997475,0.00009291045,0.00005589541,0.0000330825,0.00002571244,0.0000448512],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000400707,0.00001948561,0.0001475193,0.00002041702,0.00000320511,0.00003856087,0.00001586443,0.00003579764,0.9982377,0.0001203461,0.00001469726,0.001306311],"study_design_scores_gemma":[0.00002312894,0.000382937,0.002758377,0.000007318017,0.00002145368,0.0005611518,0.00005975341,0.0008185363,0.9934577,0.000128188,0.001772025,0.000009408437],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9758441,0.001047452,0.02101098,0.0002475882,0.00003020061,0.00008914356,0.0004177475,0.00008510261,0.001227647],"genre_scores_gemma":[0.9755718,0.0008278546,0.0192905,0.00009633198,0.00001276281,0.00007033563,0.001486973,0.00005771802,0.002585762],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000688181,"threshold_uncertainty_score":0.002302229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01575495289141307,"score_gpt":0.2551233628835979,"score_spread":0.2393684099921849,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}