{"id":"W1997115296","doi":"10.3389/fmicb.2014.00206","title":"Generating viral metagenomes from the coral holobiont","year":2014,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":78,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"","keywords":"Holobiont; Biology; Metagenomics; Nucleic acid; Coral; RNA; Genome; Computational biology; Evolutionary biology; Gene; Ecology; Genetics; Symbiosis; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003347452,0.0004804071,0.0002701444,0.0005877566,0.0003796914,0.0006628904,0.0003663502,0.0005089687,0.0008612362],"category_scores_gemma":[0.0007301376,0.0003307869,0.0006364074,0.000454414,0.0002028076,0.0004331632,0.0007773205,0.0009269812,0.0006687664],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002605869,"about_ca_system_score_gemma":0.0004049111,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006338853,"about_ca_topic_score_gemma":0.001477417,"domain_scores_codex":[0.9996953,0.00004377302,0.0000300207,0.00006388555,0.0001153202,0.00005161782],"domain_scores_gemma":[0.9997659,0.00005442043,0.00005978329,0.00004069338,0.00004226223,0.00003686606],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003470585,0.00001488106,0.0004010112,0.00009766383,0.000007873774,0.00004723075,0.00006573713,0.0002668676,0.9948597,0.0002115385,0.00003810928,0.003954688],"study_design_scores_gemma":[0.00001485297,0.0003636573,0.00385177,0.00004478698,0.00003948541,0.0003161472,0.0001397159,0.00182211,0.98476,0.0002659676,0.008362328,0.00001919142],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8975406,0.002531536,0.08760852,0.0002240106,0.0001428096,0.0008823525,0.004838479,0.0004758827,0.005755831],"genre_scores_gemma":[0.8092455,0.004239605,0.16242,0.0002819812,0.00004887703,0.0005935277,0.01729545,0.0003884544,0.00548649],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008612362,"threshold_uncertainty_score":0.00288111,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00575920543976164,"score_gpt":0.202590422578676,"score_spread":0.1968312171389144,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}