{"id":"W1997207382","doi":"10.1371/journal.pone.0119689","title":"Personalized Oncogenomics: Clinical Experience with Malignant Peritoneal Mesothelioma Using Whole Genome Sequencing","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Occupational and environmental lung diseases","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; BC Cancer Agency; University of British Columbia","funders":"BC Cancer Agency; BC Cancer Foundation; University of British Columbia; Canada's Michael Smith Genome Sciences Centre","keywords":"Peritoneal mesothelioma; Mesothelioma; CDKN2A; Context (archaeology); Biology; Malignancy; Exome sequencing; Medicine; Phenotype; Cancer research; Pathology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002037733,0.0002291049,0.00023263,0.0003038169,0.0003552606,0.0007719531,0.0002495795,0.0004929648,0.001018472],"category_scores_gemma":[0.003498287,0.000120417,0.0002497539,0.00064148,0.0004275564,0.000663909,0.0009804566,0.0008945539,0.0003317334],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003031821,"about_ca_system_score_gemma":0.0003979495,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003741694,"about_ca_topic_score_gemma":0.000898916,"domain_scores_codex":[0.9994096,0.0003114908,0.00002567846,0.0001244965,0.00008480534,0.0000439498],"domain_scores_gemma":[0.9988996,0.0005218607,0.00007850761,0.0001807959,0.0001061924,0.0002130593],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"case_report","study_design_scores_codex":[0.0008385353,0.0002867803,0.2526368,0.000329025,0.0002452116,0.009446577,0.00478222,0.004411072,0.03067113,0.002606707,0.01707012,0.6766757],"study_design_scores_gemma":[0.0002971436,0.002170561,0.5337765,0.0006122068,0.0005527468,0.08255651,0.005339984,0.02106898,0.04537781,0.03772643,0.2702904,0.0002308421],"study_design_candidate":"case_report","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9139991,0.01325752,0.04495651,0.01467986,0.0002228772,0.0001311801,0.00108944,0.0004956427,0.01116775],"genre_scores_gemma":[0.9638889,0.006168338,0.02326909,0.003823692,0.000246193,0.00006910039,0.000926524,0.000198705,0.001409248],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002037733,"threshold_uncertainty_score":0.0107767,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.203038106441972,"score_gpt":0.3285932292292595,"score_spread":0.1255551227872875,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}