{"id":"W1997275472","doi":"10.1093/molbev/msh256","title":"Phylogenetic Analysis of the ING Family of PHD Finger Proteins","year":2004,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":189,"is_retracted":false,"has_abstract":true,"ca_institutions":"South Health Campus; University of Victoria; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; University of Calgary; Genome Prairie; Fondation pour la Recherche Médicale; Canadian Institutes of Health Research; Genome Canada; Michael Smith Health Research BC","keywords":"Biology; Gene; Genetics; Gene family; Conserved sequence; Phylogenetic tree; Alternative splicing; Functional divergence; Protein family; Histone; Phylogenetics; Chromatin remodeling; Genome; Gene isoform; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000279363,0.0001914218,0.0002323828,0.001190625,0.0004548389,0.0002575436,0.0001912335,0.000158651,0.0009241099],"category_scores_gemma":[0.0003072757,0.00007154853,0.0002002268,0.0008024819,0.0001639595,0.000230367,0.0002764653,0.0003330768,0.0005832398],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002176656,"about_ca_system_score_gemma":0.0001785949,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009183695,"about_ca_topic_score_gemma":0.0007451675,"domain_scores_codex":[0.9998677,0.00002055323,0.00000833666,0.00003633637,0.00002811904,0.00003888247],"domain_scores_gemma":[0.9997674,0.00004406977,0.00005452773,0.00001586294,0.00004706523,0.00007108753],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001240736,0.000155835,0.2103883,0.0004379524,0.0001353661,0.001384529,0.000816914,0.001474124,0.6728907,0.001493775,0.001041302,0.1085403],"study_design_scores_gemma":[0.0000219734,0.0004033668,0.9085028,0.00005031546,0.0001483663,0.004207953,0.0005913419,0.006023844,0.03907986,0.0008352746,0.04010208,0.00003294514],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9888265,0.002829552,0.003124898,0.0001069111,0.00001095299,0.00002918124,0.001143907,0.00004903362,0.003878991],"genre_scores_gemma":[0.9835588,0.00150868,0.007709141,0.0001064083,0.00002103609,0.00002023812,0.005263011,0.00002066956,0.001792025],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001190625,"threshold_uncertainty_score":0.003091455,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009363451141926245,"score_gpt":0.2392579269915864,"score_spread":0.2298944758496601,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}