{"id":"W1997511314","doi":"10.1371/journal.ppat.1000507","title":"Systematic Genetic Nomenclature for Type VII Secretion Systems","year":2009,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":312,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Nomenclature; Type (biology); Secretion; Citation; Biology; Computational biology; Zoology; Computer science; Library science; Taxonomy (biology); Ecology; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003869665,0.001431018,0.001566464,0.006595186,0.001774053,0.003292002,0.001808206,0.001690954,0.004481257],"category_scores_gemma":[0.007203892,0.000547526,0.001463544,0.008070251,0.002422896,0.002136102,0.00211809,0.004451029,0.005078006],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002354241,"about_ca_system_score_gemma":0.007063414,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00214453,"about_ca_topic_score_gemma":0.002260601,"domain_scores_codex":[0.9962627,0.001204239,0.0009223843,0.0004167834,0.000946578,0.0002472831],"domain_scores_gemma":[0.9933004,0.001025613,0.001777714,0.00140935,0.002028848,0.0004579965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0010119,0.0002753977,0.008447327,0.00609384,0.0001872818,0.001545707,0.004510147,0.003283494,0.1259827,0.2310262,0.1692159,0.4484201],"study_design_scores_gemma":[0.00004727241,0.000251898,0.003324123,0.001270832,0.00007856102,0.001904909,0.0006388589,0.001538318,0.006303144,0.03078851,0.9537714,0.00008228705],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.08301414,0.08634293,0.6326385,0.01466419,0.02630856,0.003521158,0.04134971,0.008858722,0.1033021],"genre_scores_gemma":[0.08746455,0.02770406,0.8130512,0.003647042,0.00116952,0.001881489,0.04840453,0.001176099,0.01550152],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.006595186,"threshold_uncertainty_score":0.02046502,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04034441839649985,"score_gpt":0.303357150477937,"score_spread":0.2630127320814372,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}