{"id":"W1997518685","doi":"10.3354/dao052233","title":"Molecular diagnostics, field validation, and phylogenetic analysis of Quahog Parasite Unknown (QPX), a pathogen of the hard clam Mercenaria mercenaria","year":2002,"lang":"en","type":"article","venue":"Diseases of Aquatic Organisms","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Mercenaria; Biology; Primer (cosmetics); Phylogenetic tree; Ribosomal DNA; Genetics; Zoology; Gene; Ecology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008028252,0.0001294057,0.0003046671,0.00006806682,0.0000716676,0.000006916718,0.0002438256,0.00007450144,0.002254045],"category_scores_gemma":[0.0004599807,0.00009944119,0.0001673452,0.0004734948,0.0003048768,0.00005498033,0.000103715,0.00006035573,0.00002781162],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001874495,"about_ca_system_score_gemma":0.000009937742,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002179629,"about_ca_topic_score_gemma":0.00007194408,"domain_scores_codex":[0.9988931,0.0001520995,0.0003709643,0.0002271235,0.0002187988,0.000137886],"domain_scores_gemma":[0.9988527,0.0003651206,0.000270411,0.000412789,0.0000216971,0.00007731473],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001490049,0.0002635169,0.8361518,0.00001274709,0.0003883994,0.000001443922,0.000509209,0.000811894,0.1605588,0.0002483684,0.0001642829,0.0008746276],"study_design_scores_gemma":[0.0001837835,0.0001142396,0.9126601,0.00001820469,0.002056841,0.000001109447,0.00007548433,0.001757567,0.08246638,0.000488087,0.00006196901,0.0001162984],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976761,0.0005188543,0.000846338,0.0002613591,0.00006180893,0.0001821432,0.0001236338,0.000007138497,0.0003225612],"genre_scores_gemma":[0.9992619,0.000182161,0.0002940627,0.0001417083,0.000007055925,0.000007259431,0.00002632151,0.000008186672,0.00007130051],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0780924,"threshold_uncertainty_score":0.998658,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008451035003060593,"score_gpt":0.2540046822260454,"score_spread":0.2455536472229848,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}