{"id":"W1997520854","doi":"10.1093/gbe/evp047","title":"The Complete Plastid Genome Sequence of the Secondarily Nonphotosynthetic Alga Cryptomonas paramecium: Reduction, Compaction, and Accelerated Evolutionary Rate","year":2009,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"Canadian Institutes of Health Research; Nova Scotia Health Research Foundation; Canadian Institute for Advanced Research","keywords":"Biology; Plastid; Genome; Paramecium; Genetics; Pseudogene; Endosymbiosis; Gene; Botany; Chloroplast; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008695915,0.0007339343,0.0004495952,0.0005636928,0.000370807,0.0003401552,0.0003675463,0.0004227172,0.003906925],"category_scores_gemma":[0.0003155747,0.000252351,0.0005661845,0.0009409434,0.0001351563,0.0003241715,0.0002871373,0.0008840658,0.002972506],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004439701,"about_ca_system_score_gemma":0.0007363836,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002835667,"about_ca_topic_score_gemma":0.002161685,"domain_scores_codex":[0.999897,0.000006337775,0.000007680052,0.00004135843,0.00003258093,0.00001513868],"domain_scores_gemma":[0.999742,0.00004855333,0.00005307867,0.00003642152,0.00006755372,0.00005246619],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000540489,0.00004905974,0.002516624,0.000633652,0.00004109354,0.0003442003,0.0001519443,0.0003463348,0.9712636,0.0002179956,0.001309028,0.02258586],"study_design_scores_gemma":[0.0002784382,0.0007514713,0.3339108,0.0003297362,0.0006781151,0.004510617,0.0004545143,0.003977824,0.4624644,0.001021774,0.1914842,0.0001381508],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7580023,0.009985235,0.03138715,0.0007809703,0.0003149019,0.000217294,0.1925345,0.001181715,0.00559607],"genre_scores_gemma":[0.4317409,0.005946206,0.03705225,0.0002857495,0.0001301541,0.0002322481,0.5148046,0.0006529914,0.009154868],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003906925,"threshold_uncertainty_score":0.01306999,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01703300121636314,"score_gpt":0.2374325273979152,"score_spread":0.2203995261815521,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}