{"id":"W1997560984","doi":"10.1016/j.gene.2007.01.018","title":"Identification and transcription of transfer RNA genes in dinoflagellate plastid minicircles","year":2007,"lang":"en","type":"article","venue":"Gene","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Minicircle; Biology; Transfer RNA; Gene; Dinoflagellate; Genetics; Chloroplast DNA; Genome; DNA; RNA; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001680579,0.00004992803,0.00006081905,0.00003794693,0.00002134858,0.000003854163,0.00005316416,0.00007324388,0.000004591747],"category_scores_gemma":[0.000004498767,0.00005612644,0.00002576252,0.00004340643,0.00004172058,0.000002547236,0.000009624243,0.00002316722,0.000001097539],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003244921,"about_ca_system_score_gemma":0.000007964934,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001689658,"about_ca_topic_score_gemma":0.00008154148,"domain_scores_codex":[0.9995852,0.00001489313,0.0001285411,0.0001348407,0.0000467141,0.00008977781],"domain_scores_gemma":[0.9998532,0.000004289322,0.00001682711,0.00008223301,0.00001883859,0.00002462231],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009416609,0.00001962537,0.007717267,0.00001893363,0.00001002504,0.000001849835,0.0001281701,0.00001743292,0.9863053,0.00001792667,0.00001299302,0.005656308],"study_design_scores_gemma":[0.0002806266,0.00004710997,0.147561,0.000003826499,0.000007811042,0.000003285826,0.00003558349,0.000006845828,0.8516748,0.00003668555,0.0002884312,0.00005401055],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930214,0.001211641,0.005462167,0.00001782233,0.00005890811,0.00008690591,0.00002668385,0.000002332539,0.0001121675],"genre_scores_gemma":[0.9992244,0.0004764225,0.0001471079,0.00001849426,0.00003401012,0.00000125818,0.00004333465,0.000003871515,0.00005104855],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1398437,"threshold_uncertainty_score":0.228877,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00983018220809483,"score_gpt":0.2191522857522272,"score_spread":0.2093221035441323,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}