{"id":"W1997720987","doi":"10.1016/j.jprot.2015.03.017","title":"Quantitative changes in proteins responsible for flavonoid and anthocyanin biosynthesis in strawberry fruit at different ripening stages: A targeted quantitative proteomic investigation employing multiple reaction monitoring","year":2015,"lang":"en","type":"article","venue":"Journal of Proteomics","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":false,"ca_institutions":"Acadia University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Anthocyanin; Ripening; Chalcone synthase; Chalcone isomerase; Biochemistry; Flavonoid biosynthesis; Flavonoid; Phenylalanine ammonia-lyase; 1-Methylcyclopropene; Chemistry; Anthocyanidin; Biosynthesis; Biology; Phenylalanine; Food science; Enzyme; Amino acid; Transcriptome; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001089355,0.0002042547,0.0003714541,0.0004648448,0.00007615865,0.00004165994,0.0001353426,0.0001745929,6.025091e-7],"category_scores_gemma":[0.00218961,0.0001829159,0.00007049432,0.0001891025,0.00005648427,0.00004430268,0.00008530717,0.000219189,4.672927e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002353236,"about_ca_system_score_gemma":0.0001845151,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008818218,"about_ca_topic_score_gemma":0.0009797082,"domain_scores_codex":[0.9983731,0.0003326425,0.0005415244,0.0002962484,0.0002115099,0.0002449758],"domain_scores_gemma":[0.9986992,0.0001232187,0.000689777,0.000133409,0.0002197493,0.0001346707],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002819066,0.00005259224,0.05403924,0.00005148637,0.00005396376,0.000007936731,0.001318689,0.0003791323,0.9411383,0.000007416917,0.00003596659,0.00009618152],"study_design_scores_gemma":[0.001668671,0.0008787547,0.016747,0.0003916762,0.00002523551,0.00001176989,0.001962584,0.002172517,0.9757628,0.0001583465,0.00002194163,0.0001986971],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957463,0.0002705708,0.002520175,0.0002582102,0.0000882723,0.001072675,0.0000348464,0.000005761282,0.000003222667],"genre_scores_gemma":[0.9074795,0.000163205,0.09204717,0.00001119868,0.00007690468,0.0001346883,0.00002164691,0.0000265704,0.00003913125],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08952699,"threshold_uncertainty_score":0.7459094,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0630273654640348,"score_gpt":0.312747148326715,"score_spread":0.2497197828626802,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}