{"id":"W1997722880","doi":"10.1016/j.ympev.2006.03.029","title":"Attributes and congruence of three molecular data sets: Inferring phylogenies among Septoria-related species from woody perennial plants","year":2006,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Plant Parasitism and Resistance","field":"Agricultural and Biological Sciences","cited_by":31,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université Laval","funders":"National Eye Institute","keywords":"Biology; Phylogenetic tree; Septoria; Monophyly; Evolutionary biology; Taxon; Phylogenetics; Genetics; Gene; Ecology; Clade; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009941075,0.0001731135,0.0002204802,0.00001750554,0.0001397735,0.00005479313,0.0002328936,0.0001391328,0.00001228645],"category_scores_gemma":[0.00002146804,0.00009416496,0.00003525065,0.0001184536,0.0002409109,0.00007036477,0.0002018258,0.00008339535,0.000001318616],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001216311,"about_ca_system_score_gemma":0.000008393608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001756655,"about_ca_topic_score_gemma":0.002424794,"domain_scores_codex":[0.9988517,0.00005331878,0.0002534774,0.0003977781,0.0002061652,0.0002375974],"domain_scores_gemma":[0.9995689,0.00006400126,0.0001250055,0.0001322074,0.00004569455,0.0000641478],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001287507,0.00002380821,0.2107668,0.00000677012,0.00002801686,0.00001648902,0.00001023788,0.00007254254,0.7880703,0.0004110352,0.00004052997,0.0005405521],"study_design_scores_gemma":[0.0002061461,0.00006646737,0.9542574,0.00004518692,0.00003972524,0.000007166576,0.00003674931,0.001073191,0.04056202,0.003314589,0.0001890775,0.0002022337],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901963,0.007527203,0.0002360594,0.00005644378,0.00009492409,0.0001394053,0.00159922,0.00002001392,0.0001304662],"genre_scores_gemma":[0.9984521,0.0002694221,0.0002314393,0.00001004676,0.00006420595,0.000003023862,0.0009551152,0.000001980301,0.00001270334],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7475083,"threshold_uncertainty_score":0.3839935,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01312902023523465,"score_gpt":0.1974102868237392,"score_spread":0.1842812665885045,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}