{"id":"W1997915530","doi":"10.1128/jcm.42.4.1626-1630.2004","title":"Reassessment of Sequence-Based Targets for Identification of<i>Bacillus</i>Species","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; TransCanada (Canada); Health Canada","funders":"","keywords":"rpoB; Biology; 16S ribosomal RNA; Cereus; Bacillus anthracis; Ribosomal RNA; Genetics; 23S ribosomal RNA; Sequence analysis; Nucleic acid sequence; Gene; Bacillus cereus; Microbiology; Bacteria; Ribosome; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001731186,0.00009547538,0.0004735596,0.00005942367,0.00002556672,0.000005668741,0.0002776393,0.000253427,0.00001968106],"category_scores_gemma":[0.001093731,0.00007437549,0.0004001519,0.00006184605,0.0003529747,0.000004391479,0.00004124325,0.0001341409,0.000001296855],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001759896,"about_ca_system_score_gemma":0.0005202337,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000420041,"about_ca_topic_score_gemma":0.000006633843,"domain_scores_codex":[0.997956,0.0001344136,0.001502241,0.0001708609,0.00006612319,0.0001703161],"domain_scores_gemma":[0.9976125,0.0001448268,0.001112603,0.0002112182,0.0008462191,0.00007267328],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001014564,0.0002488116,0.0009634511,0.0000497049,0.00009628478,0.000001071364,0.000008503515,0.00009264193,0.9920451,0.0002202241,0.0003708818,0.004888779],"study_design_scores_gemma":[0.003093406,0.002896761,0.008809277,0.00004289193,0.00004160316,0.0000254319,0.00002015432,0.00000443821,0.9350896,0.0006250236,0.04925047,0.0001009477],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9749389,0.0004847618,0.02286956,0.0005570934,0.0006870288,0.00019033,0.000204423,0.000001251465,0.0000666897],"genre_scores_gemma":[0.9954973,0.0004376539,0.00346988,0.00009885736,0.0003355841,0.000003162607,0.00007055738,0.000009197275,0.0000777608],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05695549,"threshold_uncertainty_score":0.3032945,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07026542212458345,"score_gpt":0.3938919520676185,"score_spread":0.3236265299430351,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}