{"id":"W1997984718","doi":"10.1186/1756-0500-7-727","title":"Investigating genome reduction of Bordetella pertussis using a multiplex PCR-based reverse line blot assay (mPCR/RLB)","year":2014,"lang":"en","type":"article","venue":"BMC Research Notes","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Health and Medical Research Council; Centers for Disease Control and Prevention; Medical Research Council; Public Health Agency; Public Health Agency of Canada","keywords":"Bordetella pertussis; Whooping cough; Biology; Multiplex polymerase chain reaction; Gene; Genome; Multiplex; Microbiology; Genetics; Polymerase chain reaction; Virology; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002965517,0.0001571983,0.0003002623,0.0003804161,0.0004584987,0.00003544737,0.0001856952,0.0002516176,0.0004230218],"category_scores_gemma":[0.006316968,0.0001359834,0.0001087378,0.0004958546,0.0003812479,0.000106995,0.000114886,0.0004178414,0.00008095826],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006300529,"about_ca_system_score_gemma":0.0002057683,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003136151,"about_ca_topic_score_gemma":0.0001815164,"domain_scores_codex":[0.9970827,0.001629826,0.0004193218,0.000344135,0.00006437306,0.0004596815],"domain_scores_gemma":[0.9974545,0.001448449,0.0001589464,0.0004022037,0.0004843656,0.00005153665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008347123,0.0001165676,0.008212719,0.00008566045,0.00003802262,1.363691e-7,0.0001303331,0.0005370906,0.9880008,0.0000712434,0.0001364735,0.00258747],"study_design_scores_gemma":[0.001889231,0.0005965227,0.01660973,0.0002012353,0.00004587694,0.00003317216,0.0002383137,0.006958003,0.9560858,0.0002274686,0.01680378,0.0003108655],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958579,0.000345588,0.002637471,0.0002738869,0.0003890681,0.0002986333,0.00002488637,0.00005620265,0.0001163881],"genre_scores_gemma":[0.9938188,0.00002727465,0.00539509,0.00001600742,0.0002673748,0.00002143347,0.0000735248,0.00002631151,0.0003541975],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03191502,"threshold_uncertainty_score":0.7562457,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2030821198306316,"score_gpt":0.38535427618467,"score_spread":0.1822721563540384,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}