{"id":"W1998360156","doi":"10.1111/1755-0998.12191","title":"Single‐nucleotide polymorphism discovery in <i><scp>L</scp>eptographium longiclavatum</i>, a mountain pine beetle‐associated symbiotic fungus, using whole‐genome resequencing","year":2013,"lang":"en","type":"article","venue":"Molecular Ecology Resources","topic":"Forest Insect Ecology and Management","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Natural Resources Canada; Canadian Forest Service; University of British Columbia","funders":"Genome Alberta; Genome Canada","keywords":"Biology; Genotyping; Single-nucleotide polymorphism; Genetics; Genome; Genomics; Population genomics; Population; Reference genome; Sequence assembly; Whole genome sequencing; Computational biology; Genotype; Gene; Transcriptome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002873038,0.0002739551,0.0003171802,0.0005734144,0.0003189478,0.0003905968,0.0002093774,0.0003370784,0.0004157271],"category_scores_gemma":[0.0003819072,0.0001487247,0.0004959199,0.0005568535,0.0001569316,0.0001134984,0.0002647165,0.0002967409,0.0001726213],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002744094,"about_ca_system_score_gemma":0.0003592681,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00352268,"about_ca_topic_score_gemma":0.007416534,"domain_scores_codex":[0.9996802,0.00004077216,0.00002637816,0.0001376033,0.00007657126,0.00003852044],"domain_scores_gemma":[0.9997024,0.00007797043,0.00008639292,0.0000259792,0.00005517616,0.00005200557],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001401696,0.00003542141,0.01855716,0.00009235527,0.00005677576,0.0003674008,0.000157557,0.0003022361,0.9726645,0.00007472719,0.0001490922,0.007402542],"study_design_scores_gemma":[0.00006073223,0.0006156805,0.7457694,0.00004395388,0.0001979365,0.001137547,0.0004023945,0.004567273,0.2377809,0.0001212543,0.009252951,0.00004992906],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927002,0.0003184299,0.003714632,0.00003389511,0.000006829852,0.00006107605,0.002566242,0.00006937013,0.0005293733],"genre_scores_gemma":[0.9807038,0.0002246333,0.01114011,0.0001347389,0.000008673894,0.0001188085,0.006659175,0.00005132801,0.0009587749],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00352268,"threshold_uncertainty_score":0.00700438,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007085266415458962,"score_gpt":0.1936509451638291,"score_spread":0.1865656787483702,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}