{"id":"W1998456347","doi":"10.1006/mcpr.2001.0403","title":"Integration host factor interactions with Neisseria gene sequences: correlation between predicted binding sites and in vitro binding of Neisseria -derived IHF protein","year":2002,"lang":"en","type":"article","venue":"Molecular and Cellular Probes","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Ottawa","funders":"National Science Foundation","keywords":"Biology; Binding site; Host factor; Neisseria; Gene; Genetics; Computational biology; Neisseria gonorrhoeae; Sigma factor; Escherichia coli; Molecular biology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005947741,0.0005720663,0.0006076588,0.001008203,0.0006983891,0.0007234301,0.0006388872,0.0006821803,0.004681476],"category_scores_gemma":[0.001321217,0.0005284799,0.0005343701,0.000388532,0.0004931197,0.0003451196,0.0003702431,0.001247141,0.001692854],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006509182,"about_ca_system_score_gemma":0.0004721545,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004591139,"about_ca_topic_score_gemma":0.005887509,"domain_scores_codex":[0.9994965,0.0001066392,0.00002073191,0.0000855851,0.0001320346,0.0001585642],"domain_scores_gemma":[0.9978476,0.00116681,0.000147529,0.0001346544,0.000276472,0.0004270549],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000206914,0.00009372247,0.001338403,0.00002526144,0.00001141667,0.00003788175,0.0000364992,0.0001297515,0.9970078,0.0001327882,0.00006286189,0.0009167542],"study_design_scores_gemma":[0.00001859116,0.0002713182,0.02132031,0.00001212561,0.00002506759,0.0002966917,0.00009303448,0.002719089,0.9738047,0.0001432578,0.001277593,0.00001820451],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886543,0.001319764,0.007016263,0.0001112509,0.00002407209,0.00002849366,0.0002298909,0.00008044449,0.002535621],"genre_scores_gemma":[0.9897493,0.0003502434,0.006093961,0.0000879098,0.00002213708,0.00003467167,0.001643459,0.00005275013,0.001965503],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004681476,"threshold_uncertainty_score":0.01566106,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01531527268980653,"score_gpt":0.2175503184295963,"score_spread":0.2022350457397898,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}