{"id":"W1998516546","doi":"10.1093/nar/gkp028","title":"A rapid simple approach to quantify chromosome conformation capture","year":2009,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network","funders":"","keywords":"Biology; Computational biology; SYBR Green I; Chromosome conformation capture; TaqMan; Chromatin; DNA; Enhancer; In silico; Chromosome; Real-time polymerase chain reaction; Genetics; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001851282,0.001704941,0.001079338,0.003277692,0.0007365644,0.001077289,0.001225961,0.001329278,0.0164249],"category_scores_gemma":[0.002257374,0.0008367251,0.0007340505,0.001342168,0.0008067195,0.0006604534,0.001147452,0.002323759,0.007769585],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006796052,"about_ca_system_score_gemma":0.0007197641,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009358199,"about_ca_topic_score_gemma":0.003352432,"domain_scores_codex":[0.9962929,0.0006190838,0.0002173158,0.001184233,0.001503688,0.0001827668],"domain_scores_gemma":[0.9983706,0.0005306455,0.000159786,0.0003623482,0.0004663686,0.000110205],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005302573,0.00006598971,0.0004241962,0.0002365315,0.00002428348,0.00002865067,0.00004226004,0.0001574393,0.9709865,0.0006468846,0.001092025,0.0262422],"study_design_scores_gemma":[0.00005860194,0.0005927217,0.008653429,0.0001000235,0.00009606114,0.0005420618,0.00005639065,0.005273934,0.9275718,0.001241395,0.05572559,0.00008793201],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.03361167,0.005779758,0.9366112,0.0005278875,0.000515573,0.003097487,0.006175437,0.004294215,0.009386892],"genre_scores_gemma":[0.09284367,0.005050115,0.854765,0.0008934878,0.0001991765,0.007488945,0.01036463,0.0008946516,0.02750033],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.0164249,"threshold_uncertainty_score":0.05494672,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03242089150486095,"score_gpt":0.3129276058760688,"score_spread":0.2805067143712079,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}