{"id":"W1998716355","doi":"10.1210/me.2009-0319","title":"Regulation of Signal Transducer and Activator of Transcription 3 Enhanceosome Formation by Apurinic/Apyrimidinic Endonuclease 1 in Hepatic Acute Phase Response","year":2009,"lang":"en","type":"article","venue":"Molecular Endocrinology","topic":"Cytokine Signaling Pathways and Interactions","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Heart, Lung, and Blood Institute; Università degli Studi di Udine; York University; American Heart Association","keywords":"Biology; Molecular biology; Gene knockdown; STAT protein; Transcription factor; Chromatin immunoprecipitation; DNA-(apurinic or apyrimidinic site) lyase; Chromatin; Cell biology; AP site; STAT3; Promoter; Signal transduction; DNA repair; Gene expression; Biochemistry; DNA","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001064132,0.0001327138,0.000351616,0.0003059052,0.00002342708,0.000003730358,0.00004644971,0.00007659235,0.0001162676],"category_scores_gemma":[0.00004636115,0.0001342369,0.0001027245,0.0001629887,0.00007127309,0.0001614618,0.000005544719,0.0001603831,0.000001625064],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004944182,"about_ca_system_score_gemma":0.00004324517,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002105622,"about_ca_topic_score_gemma":0.000002081542,"domain_scores_codex":[0.9988023,0.0001495619,0.0005060441,0.0001991641,0.0001431165,0.0001997978],"domain_scores_gemma":[0.9995127,0.00006067385,0.0001234518,0.000176323,0.00006707717,0.00005972473],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00503224,0.0005486938,0.0000334995,0.00005454584,0.00004698199,0.0000351741,0.000472227,0.00001509017,0.9845681,0.0003560864,0.00003128273,0.008806092],"study_design_scores_gemma":[0.004773632,0.00265823,0.003831504,0.0001017338,0.0001304791,0.0001748971,0.00005757103,0.0009794497,0.9866372,0.0002261452,0.0003354417,0.00009370511],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886912,0.0003010783,0.009571091,0.0008945196,0.0000371874,0.0003573757,0.00003590691,0.00002175473,0.00008990934],"genre_scores_gemma":[0.9993053,0.0001246499,0.0002955629,0.0001522766,0.0000104232,0.00001540921,0.00006450713,0.00001203604,0.00001985612],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0106141,"threshold_uncertainty_score":0.5474023,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01228322925680613,"score_gpt":0.2926484691879588,"score_spread":0.2803652399311527,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}