{"id":"W1998724814","doi":"10.1371/journal.pone.0025081","title":"Comparing COI and ITS as DNA Barcode Markers for Mushrooms and Allies (Agaricomycotina)","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":144,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"University of Toronto; Natural Sciences and Engineering Research Council of Canada; National Park Service; Genome Canada; Ontario Genomics; Ontario Genomics Institute","keywords":"DNA barcoding; Barcode; Biology; Locus (genetics); Mitochondrial DNA; Genetics; Internal transcribed spacer; Intron; Clade; Evolutionary biology; Taxon; Phylogenetic tree; Gene; Genetic marker; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001388436,0.0004222916,0.0004578516,0.001549923,0.0004931131,0.001080597,0.000374353,0.0005639255,0.0009908287],"category_scores_gemma":[0.00474932,0.0001960237,0.0003758017,0.001455751,0.0005020101,0.0007094652,0.0006491598,0.0006842701,0.0003831349],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005226483,"about_ca_system_score_gemma":0.0004289947,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002727011,"about_ca_topic_score_gemma":0.006825801,"domain_scores_codex":[0.998944,0.0003182388,0.0001022001,0.0002927889,0.0002146707,0.0001281757],"domain_scores_gemma":[0.9968814,0.001483512,0.0005283433,0.0002638955,0.000552732,0.0002902356],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001425226,0.00008144118,0.07904786,0.0006245458,0.0002497413,0.0001426559,0.0009706825,0.0008294864,0.8477854,0.0007659733,0.0002089709,0.06786802],"study_design_scores_gemma":[0.00004549279,0.0008995061,0.5075466,0.0001654428,0.0006707052,0.001315925,0.001790809,0.01038512,0.4604128,0.001482051,0.01520391,0.00008166709],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9725381,0.00298794,0.02051002,0.000210936,0.00004738949,0.00006575753,0.0008800064,0.0000765135,0.002683323],"genre_scores_gemma":[0.9606256,0.001013433,0.03521419,0.0001386034,0.00002057578,0.00006436837,0.00191169,0.00005501991,0.0009562842],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002727011,"threshold_uncertainty_score":0.007342815,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08748936945850162,"score_gpt":0.2057941913201576,"score_spread":0.118304821861656,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}