{"id":"W1999114258","doi":"10.4161/viru.25180","title":"Prediction of molecular mimicry candidates in human pathogenic bacteria","year":2013,"lang":"en","type":"article","venue":"Virulence","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"","keywords":"Biology; Molecular mimicry; Virulence; Pathogen; Proteome; Mimicry; Genetics; Eukaryote; Microbiology; Proteomics; Human pathogen; Genome; Computational biology; Bacteria; Gene; Immune system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003918458,0.0007971544,0.0006012737,0.00236076,0.0004297852,0.0007443407,0.000324156,0.0007392777,0.002145716],"category_scores_gemma":[0.001316579,0.0003028665,0.001048409,0.001057115,0.0001886276,0.0003489857,0.000496588,0.0002728252,0.001007517],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002991286,"about_ca_system_score_gemma":0.0005776561,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006792257,"about_ca_topic_score_gemma":0.0009001091,"domain_scores_codex":[0.9996618,0.0000771944,0.0000291765,0.00009601081,0.00007802944,0.00005769954],"domain_scores_gemma":[0.9995651,0.0001437623,0.0001352746,0.00002257702,0.00005318855,0.00008023331],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.004042421,0.001021716,0.390858,0.002048536,0.0007150597,0.01191549,0.000315039,0.04301602,0.4063813,0.002327299,0.007365848,0.1299933],"study_design_scores_gemma":[0.000338013,0.003249608,0.3938509,0.0002728805,0.001204502,0.01662472,0.001064664,0.4548665,0.1031031,0.00465279,0.02063578,0.0001364435],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9835682,0.002170888,0.009736056,0.0001632047,0.00002309389,0.00009531577,0.002382452,0.0004398538,0.001420976],"genre_scores_gemma":[0.9696592,0.00077277,0.02234958,0.00009147267,0.00002745473,0.00006757365,0.00636112,0.00003980118,0.000630854],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00236076,"threshold_uncertainty_score":0.007178128,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008766426407948552,"score_gpt":0.2101240052670407,"score_spread":0.2013575788590921,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}