{"id":"W1999290683","doi":"10.1042/bj20081318","title":"Structural basis and specificity of human otubain 1-mediated deubiquitination","year":2008,"lang":"en","type":"article","venue":"Biochemical Journal","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":206,"is_retracted":false,"has_abstract":true,"ca_institutions":"Structural Genomics Consortium; University of Toronto","funders":"Medical Research Council; Karolinska Institutet; Knut och Alice Wallenbergs Stiftelse; Universiteit Leiden; University of Oxford; Stiftelsen för Strategisk Forskning; Imperial College London; Ontario Genomics Institute; Ontario Genomics; Genome Canada; GlaxoSmithKline; Ontario Innovation Trust; Wellcome Trust","keywords":"Deubiquitinating enzyme; Ubiquitin; Biology; NEDD8; Molecular biology; ISG15; Immunoprecipitation; Biochemistry; Cell biology; Gene; Ubiquitin ligase","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001574923,0.0001118964,0.0001342645,0.00004231856,0.0001412139,0.00001187953,0.0001202178,0.0001421961,0.00007054686],"category_scores_gemma":[0.0001417514,0.0000995555,0.0000718961,0.00005810949,0.0001842704,0.000004323294,0.00006631214,0.0001514434,0.000001821522],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000117623,"about_ca_system_score_gemma":0.00004194479,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003976283,"about_ca_topic_score_gemma":8.525155e-7,"domain_scores_codex":[0.9991971,0.00005561006,0.000252868,0.0001655512,0.0001582001,0.0001707191],"domain_scores_gemma":[0.999486,0.00001334313,0.0001352841,0.0001105501,0.0001209805,0.0001338536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004328345,0.00002014789,0.005066662,0.00001118077,0.00001845897,0.000006376675,0.00005037164,3.167974e-7,0.9930622,0.00004872612,0.001054793,0.0006174612],"study_design_scores_gemma":[0.0005072214,0.0002069088,0.0126558,0.00001389435,0.000007244742,0.000461403,0.00003382488,0.0000164356,0.9851286,0.0001361746,0.000709679,0.0001228372],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983778,0.0007520424,0.0000917081,0.00007189322,0.00004987688,0.0000659533,0.00002287392,0.000006138881,0.0005617252],"genre_scores_gemma":[0.9984694,0.0002295328,0.0007100204,0.00007017559,0.0003808432,0.000001895151,0.00006282559,0.00001110909,0.00006427457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007933643,"threshold_uncertainty_score":0.4059756,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02267282143418093,"score_gpt":0.2535252298869239,"score_spread":0.230852408452743,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}