{"id":"W1999291566","doi":"10.1094/mpmi-20-7-0816","title":"The Transcriptional Response of Hybrid Poplar (<i>Populus trichocarpa</i> x <i>P. deltoids</i>) to Infection by <i>Melampsora medusae</i> Leaf Rust Involves Induction of Flavonoid Pathway Genes Leading to the Accumulation of Proanthocyanidins","year":2007,"lang":"en","type":"article","venue":"Molecular Plant-Microbe Interactions","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":233,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; Genome British Columbia; Genome Canada","keywords":"Biology; Populus trichocarpa; Transcriptome; Gene; Flavonoid biosynthesis; Microarray; Gene expression; Microarray analysis techniques; Botany; Genetics; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000776702,0.0003025964,0.0002025587,0.0001925533,0.0001320086,0.00024224,0.0000930781,0.0002128462,0.0006817573],"category_scores_gemma":[0.00008992288,0.0001570963,0.0003483586,0.000137465,0.0001507115,0.0001646046,0.0002213841,0.0003485554,0.0002045258],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001940314,"about_ca_system_score_gemma":0.0001099062,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007088991,"about_ca_topic_score_gemma":0.0007895777,"domain_scores_codex":[0.9998856,0.00001223725,0.000007349368,0.00004433868,0.00001734365,0.00003304417],"domain_scores_gemma":[0.9999224,0.00001558467,0.00002226551,0.000006232217,0.000009462501,0.0000241259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004086996,0.000005902832,0.0005998184,0.00001304769,0.000002835896,0.00001392989,0.00001389735,0.00002037614,0.9990933,0.00001563169,0.00000686644,0.0001735198],"study_design_scores_gemma":[0.00001571551,0.0005687655,0.2283561,0.000009499524,0.00005728646,0.0004383415,0.0001798665,0.00142034,0.7672864,0.0001075632,0.001542727,0.00001742069],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974318,0.0002451989,0.000888896,0.00004793796,0.000006803174,0.00001244717,0.0008181884,0.0000359646,0.0005128548],"genre_scores_gemma":[0.9954275,0.0002065565,0.0008522444,0.00007915611,0.00000625711,0.00004222113,0.002008859,0.00001377728,0.001363332],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007088991,"threshold_uncertainty_score":0.002280712,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03082981817804861,"score_gpt":0.2687691418759432,"score_spread":0.2379393236978946,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}