{"id":"W1999291566","doi":"10.1094/mpmi-20-7-0816","title":"The Transcriptional Response of Hybrid Poplar (<i>Populus trichocarpa</i> x <i>P. deltoids</i>) to Infection by <i>Melampsora medusae</i> Leaf Rust Involves Induction of Flavonoid Pathway Genes Leading to the Accumulation of Proanthocyanidins","year":2007,"lang":"en","type":"article","venue":"Molecular Plant-Microbe Interactions","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":233,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; Genome British Columbia; Genome Canada","keywords":"Biology; Populus trichocarpa; Transcriptome; Gene; Flavonoid biosynthesis; Microarray; Gene expression; Microarray analysis techniques; Botany; Genetics; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001235042,0.0002769132,0.0003383712,0.0001578245,0.0006149327,0.00007961215,0.0004321641,0.0001005235,0.00004152845],"category_scores_gemma":[0.0003097856,0.0001340102,0.0002673297,0.0008890149,0.0001126353,0.0003441663,0.00009934208,0.0003901654,0.00001754837],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001374257,"about_ca_system_score_gemma":0.00005016692,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001943188,"about_ca_topic_score_gemma":0.003868142,"domain_scores_codex":[0.9975454,0.0004244309,0.0009528128,0.0003508396,0.0003415117,0.0003850011],"domain_scores_gemma":[0.9979562,0.0007927543,0.0004960054,0.0002385906,0.0003984413,0.0001180635],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001285366,0.0002622468,0.0005109489,0.00001274211,0.00008385508,0.0000028263,0.0003232763,0.0005907787,0.9831682,0.00008732206,0.002750238,0.01092219],"study_design_scores_gemma":[0.0001732624,0.0003692358,0.00509108,0.0001057512,0.00004604358,0.0001339758,0.0007032079,0.0000434612,0.8831338,0.00001791374,0.1099864,0.0001958799],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907303,0.0003255105,0.004814201,0.001234695,0.0008102874,0.0007012038,0.001264854,0.00003941739,0.00007948936],"genre_scores_gemma":[0.9985883,0.0001351683,0.0002563326,0.0002574394,0.00009389102,0.00004157108,0.0004036285,0.000007161453,0.0002164747],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1072362,"threshold_uncertainty_score":0.5464776,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03082981817804861,"score_gpt":0.2687691418759432,"score_spread":0.2379393236978946,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}