{"id":"W1999335116","doi":"10.1186/1471-2164-15-290","title":"BisQC: an operational pipeline for multiplexed bisulfite sequencing","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University; Douglas Mental Health University Institute","funders":"National Institute on Drug Abuse; Canada Research Chairs","keywords":"Bisulfite; Computer science; Bisulfite sequencing; Computational biology; Biology; DNA methylation; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006345484,0.00345269,0.001595155,0.003131416,0.001966486,0.002673552,0.004035493,0.001615333,0.01338268],"category_scores_gemma":[0.008044157,0.001945956,0.002007863,0.002159941,0.001245487,0.002121862,0.003366424,0.004309191,0.01009571],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002066901,"about_ca_system_score_gemma":0.004723729,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00431577,"about_ca_topic_score_gemma":0.004568828,"domain_scores_codex":[0.9958234,0.0007334722,0.0004211583,0.001193538,0.00149791,0.0003305041],"domain_scores_gemma":[0.9969015,0.0007196127,0.0004343722,0.0005582148,0.001100607,0.0002857131],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003912973,0.0005082272,0.009359688,0.003474305,0.0009273568,0.0005735761,0.001754052,0.03366023,0.4400578,0.01789696,0.1590794,0.3287955],"study_design_scores_gemma":[0.0003907536,0.0007683699,0.006566224,0.0003872735,0.0002995824,0.0005883952,0.0002062156,0.2632224,0.4090521,0.03015409,0.2875994,0.0007652378],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.007233072,0.0007347396,0.8593441,0.0004006303,0.0002358069,0.0008207705,0.01313356,0.1155984,0.002499012],"genre_scores_gemma":[0.03962188,0.000658287,0.9072492,0.0006834935,0.0001193661,0.003077337,0.03228359,0.01321191,0.003094919],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01338268,"threshold_uncertainty_score":0.04476953,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03429910371373384,"score_gpt":0.2816193143718769,"score_spread":0.2473202106581431,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}