{"id":"W1999426918","doi":"10.1371/journal.pone.0052934","title":"Integron Gene Cassettes: A Repository of Novel Protein Folds with Distinct Interaction Sites","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Mount Saint Vincent University; Dalhousie University; University of Alberta","funders":"Biological and Environmental Research; National Health and Medical Research Council; National Institute of General Medical Sciences; Medical Research Council; National Institutes of Health; University of Technology Sydney; U.S. Department of Energy; Australian Government; Macquarie University; Australian Synchrotron","keywords":"Integron; Biology; Computational biology; Gene; Gene cassette; Genetics; Plasmid","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002371374,0.0003693131,0.0004863733,0.0009500228,0.0001882269,0.0006986533,0.0002817215,0.0004033975,0.001712117],"category_scores_gemma":[0.0004357464,0.000218896,0.0002533672,0.001159333,0.0003028227,0.0005958806,0.0004720841,0.0004591553,0.0006380885],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002296021,"about_ca_system_score_gemma":0.0001525075,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001326877,"about_ca_topic_score_gemma":0.0002176455,"domain_scores_codex":[0.9998311,0.00002189381,0.00001898445,0.00004217463,0.00006409251,0.00002180588],"domain_scores_gemma":[0.9995943,0.00008238888,0.0001537552,0.00008031229,0.00003344694,0.00005588679],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001693125,0.00004736696,0.006864362,0.0001476444,0.00003563481,0.0006869129,0.000174848,0.0003332787,0.9704919,0.001001299,0.0001858401,0.01986161],"study_design_scores_gemma":[0.0001006336,0.001440431,0.1811427,0.0001692549,0.000255937,0.02125357,0.0007187621,0.006219015,0.7326576,0.004612302,0.05132242,0.0001073285],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9782391,0.00161242,0.015734,0.0001364527,0.00001525541,0.00004010348,0.00169443,0.0004090858,0.002119129],"genre_scores_gemma":[0.9698644,0.001232817,0.01935894,0.0001182636,0.00001831965,0.00004118567,0.006553958,0.0001248305,0.002687426],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001712117,"threshold_uncertainty_score":0.005727589,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02529643787096492,"score_gpt":0.207503020843216,"score_spread":0.182206582972251,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}