{"id":"W1999745120","doi":"10.1007/s11295-015-0852-3","title":"Chloroplast haplotypes suggest preglacial differentiation and separate postglacial migration paths for the threatened North American forest tree Juglans cinerea L.","year":2015,"lang":"en","type":"article","venue":"Tree Genetics & Genomes","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Government of Ontario; National Institute for Mathematical and Biological Synthesis; National Science Foundation","keywords":"Biological dispersal; Biology; Range (aeronautics); Phylogeography; Ecology; Haplotype; Refugium (fishkeeping); Threatened species; Population; Last Glacial Maximum; Glacial period; Phylogenetic tree; Habitat; Paleontology; Demography","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007571224,0.0002238796,0.0001911477,0.00004264198,0.0001871086,0.00005848635,0.0001847871,0.00008466929,0.000003962141],"category_scores_gemma":[0.00003405379,0.0001761854,0.00007883803,0.0001113519,0.000140584,0.00000616854,0.00009088751,0.00005674312,0.000004447642],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001449335,"about_ca_system_score_gemma":0.00007060291,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008972818,"about_ca_topic_score_gemma":0.02405065,"domain_scores_codex":[0.9989782,0.00004277632,0.0002055619,0.0003414851,0.0001859552,0.0002460306],"domain_scores_gemma":[0.9991996,0.00002126489,0.0001570939,0.0002856216,0.0002111518,0.0001252316],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006306511,0.00005686505,0.9459412,0.00005229522,0.0002120366,0.000001279154,0.0007970228,0.002562661,0.009612477,0.00007865886,0.00339442,0.0366605],"study_design_scores_gemma":[0.001262526,0.0007784988,0.9642096,0.000007553257,0.0002531445,0.000009255985,0.00020199,0.001735863,0.003370569,0.0001441327,0.0277104,0.0003165049],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918776,0.004255608,0.00219279,0.0005934247,0.0002439678,0.0005340868,0.0001825863,0.00001736075,0.0001025968],"genre_scores_gemma":[0.9943942,0.002667919,0.0005945701,0.000240499,0.0004728692,0.00003518152,0.001169774,0.00002499938,0.0003999877],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03634399,"threshold_uncertainty_score":0.9937579,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01690383144817518,"score_gpt":0.2357866998117112,"score_spread":0.218882868363536,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}