{"id":"W1999895438","doi":"10.1093/nar/gkn863","title":"Reactome knowledgebase of human biological pathways and processes","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":886,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Human Genome Research Institute","keywords":"Biology; Computational biology; Inference; Software; Computer science; Model organism; Data mining; Gene; Artificial intelligence; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004829536,0.00009619257,0.0001422532,0.00006761798,0.0002047871,0.00001217532,0.0002177069,0.0001909844,0.00002976311],"category_scores_gemma":[0.0001755387,0.00007641622,0.00003382262,0.0001741786,0.0005634007,0.000003194048,0.000290577,0.0001938584,0.00001334059],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008213084,"about_ca_system_score_gemma":0.0001167183,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001170306,"about_ca_topic_score_gemma":0.000009909138,"domain_scores_codex":[0.9990431,0.00006415065,0.000206627,0.0002165994,0.000171173,0.0002983237],"domain_scores_gemma":[0.999272,0.0000328148,0.00004385768,0.0002688721,0.0002742017,0.0001082029],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001241228,0.0001968922,0.01332847,0.0001861143,0.00004365048,0.00001301112,0.0008233292,0.000001303068,0.9685752,0.0008867023,0.005612612,0.01020854],"study_design_scores_gemma":[0.004469829,0.009574042,0.07956181,0.0002246633,0.00002330685,0.0004194926,0.002418063,0.0004976298,0.7118145,0.007963366,0.1816311,0.001402203],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904588,0.001238584,0.00007079604,0.00004058031,0.00001925686,0.0001491971,0.0000142475,0.000008175539,0.008000309],"genre_scores_gemma":[0.9977626,0.001254183,0.0003684767,0.00003175818,0.0001399868,0.00001268206,0.00004614166,0.00001204459,0.0003720892],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2567608,"threshold_uncertainty_score":0.3116163,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08279916871782454,"score_gpt":0.3312363774649983,"score_spread":0.2484372087471738,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}