{"id":"W1999895438","doi":"10.1093/nar/gkn863","title":"Reactome knowledgebase of human biological pathways and processes","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":886,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Human Genome Research Institute","keywords":"Biology; Computational biology; Inference; Software; Computer science; Model organism; Data mining; Gene; Artificial intelligence; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001696436,0.002788334,0.003075999,0.009821273,0.001088037,0.002628764,0.003132493,0.001660798,0.04814449],"category_scores_gemma":[0.004516545,0.001290435,0.002640529,0.007795115,0.0005346737,0.001853553,0.002640723,0.002001087,0.03262756],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001369541,"about_ca_system_score_gemma":0.005263111,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006466614,"about_ca_topic_score_gemma":0.005570014,"domain_scores_codex":[0.9988284,0.0001797052,0.0001745727,0.000365627,0.0003567777,0.00009503356],"domain_scores_gemma":[0.9982911,0.0004877804,0.0002690739,0.0004142898,0.0003681893,0.0001695273],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001268903,0.0001921734,0.004596582,0.0188959,0.001340505,0.002098288,0.0004605878,0.01984904,0.0225181,0.06171825,0.6803319,0.1867298],"study_design_scores_gemma":[0.0001980678,0.00006446389,0.004601229,0.00106936,0.0005708459,0.001269505,0.000100489,0.009267631,0.009350357,0.03932856,0.9340595,0.0001200315],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.003669633,0.01030632,0.08462135,0.0007831666,0.0002765931,0.0005484315,0.8628941,0.0179967,0.0189038],"genre_scores_gemma":[0.01095554,0.006477247,0.05018076,0.0003353777,0.00006702247,0.0008835268,0.9253637,0.001176854,0.004559882],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.04814449,"threshold_uncertainty_score":0.1610594,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08279916871782454,"score_gpt":0.3312363774649983,"score_spread":0.2484372087471738,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}