{"id":"W2000142302","doi":"10.1101/gr.116228.110","title":"Variety of genomic DNA patterns for nucleosome positioning","year":2011,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"National Human Genome Research Institute; National Institutes of Health","keywords":"Nucleosome; Histone octamer; Biology; Histone; DNA; Genetics; genomic DNA; Biophysics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005804815,0.00009456943,0.0001277203,0.00007779482,0.000134967,0.00001749401,0.0003389744,0.0001167236,0.00009460656],"category_scores_gemma":[0.00002715048,0.00009898622,0.00009802547,0.00006600039,0.00009064014,0.000002375856,0.0002365661,0.00009656198,0.0000172823],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002856381,"about_ca_system_score_gemma":0.0001106517,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005171774,"about_ca_topic_score_gemma":0.00002039586,"domain_scores_codex":[0.9989335,0.00005415385,0.0002106137,0.0002820993,0.0001407912,0.0003788687],"domain_scores_gemma":[0.9992162,0.00001675682,0.00005726504,0.0003934366,0.0002335402,0.00008279757],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000725967,0.00007105774,0.001842475,0.00007650588,0.00005952791,0.000001081439,0.0003201041,0.00001730097,0.9959567,0.001002276,0.00005927773,0.0005211536],"study_design_scores_gemma":[0.002716562,0.00382082,0.3432804,0.00005491573,0.00005972357,0.0000528657,0.001622701,0.001424459,0.619643,0.008994504,0.01736311,0.0009668882],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9915413,0.0002415426,0.00538484,0.00002871098,0.00004762945,0.0003202382,0.0001555715,0.000005175456,0.002274991],"genre_scores_gemma":[0.9939608,0.0001740781,0.005105915,0.00002457716,0.0001289863,0.0000463027,0.0001876357,0.00003341196,0.0003383086],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3763136,"threshold_uncertainty_score":0.4036541,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05661418803021701,"score_gpt":0.3084172482690905,"score_spread":0.2518030602388735,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}