{"id":"W2000142302","doi":"10.1101/gr.116228.110","title":"Variety of genomic DNA patterns for nucleosome positioning","year":2011,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"National Human Genome Research Institute; National Institutes of Health","keywords":"Nucleosome; Histone octamer; Biology; Histone; DNA; Genetics; genomic DNA; Biophysics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000144175,0.0002806687,0.0001994581,0.0006335419,0.0003274703,0.0006866215,0.0002982916,0.0004582187,0.003536084],"category_scores_gemma":[0.0004636114,0.0002120381,0.0002814273,0.0006329046,0.0003954291,0.0003356726,0.0002744903,0.0004062302,0.001572656],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003123659,"about_ca_system_score_gemma":0.0002373043,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006500252,"about_ca_topic_score_gemma":0.001060223,"domain_scores_codex":[0.999819,0.00002895817,0.00001051908,0.00005919878,0.00005966798,0.00002269286],"domain_scores_gemma":[0.9998048,0.00002728878,0.00003813477,0.00004925889,0.00004500408,0.00003545932],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002258299,0.00004042537,0.009536006,0.0003181901,0.00003123375,0.0003180766,0.000180243,0.0006277379,0.9099102,0.009990596,0.0009624594,0.0678589],"study_design_scores_gemma":[0.00004293081,0.0004357781,0.08117284,0.0001433492,0.0001207748,0.005141208,0.0005877862,0.003719014,0.8242697,0.01336083,0.07089864,0.0001072243],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7870781,0.01396936,0.1338919,0.00117516,0.0005273086,0.000204103,0.002438456,0.001245419,0.05947016],"genre_scores_gemma":[0.9390558,0.003624901,0.04775439,0.0003586057,0.00008452214,0.00007250628,0.001394801,0.0001466385,0.00750785],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003536084,"threshold_uncertainty_score":0.01182938,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05661418803021701,"score_gpt":0.3084172482690905,"score_spread":0.2518030602388735,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}