{"id":"W2000365276","doi":"10.1371/journal.pone.0036933","title":"Adaptive Evolution of HIV at HLA Epitopes Is Associated with Ethnicity in Canada","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Public Health Agency of Canada","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Public Health Agency; Public Health Agency of Canada","keywords":"Human leukocyte antigen; Biology; Ethnic group; Allele; Genetics; HIV vaccine; Allele frequency; Phylogenetic tree; Gene; Antigen; Antibody; Vaccine trial","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003334762,0.0001859158,0.0003036596,0.0008252139,0.002329549,0.0007778381,0.0003992101,0.0002644591,0.001206527],"category_scores_gemma":[0.001523947,0.0001612423,0.0002285729,0.001754062,0.0007929686,0.0001292477,0.0004211586,0.0004639699,0.00009595416],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01176036,"about_ca_system_score_gemma":0.0116166,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.971827,"about_ca_topic_score_gemma":0.9821326,"domain_scores_codex":[0.999517,0.00004151934,0.0000218135,0.00008914762,0.000127241,0.0002033317],"domain_scores_gemma":[0.9992742,0.00007594785,0.0001511653,0.00003326622,0.0002870879,0.0001783476],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002756492,0.00002209734,0.979,0.00002190746,0.00005436704,0.0002531759,0.000998975,0.0004980019,0.005821521,0.0003098806,0.0004121606,0.01233217],"study_design_scores_gemma":[0.000007630651,0.00002141091,0.9962973,0.00001148532,0.00002553583,0.000199658,0.001134285,0.0005282861,0.0007685777,0.00009577732,0.0008960917,0.0000139594],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981833,0.0002428065,0.0001095932,0.0001199189,0.000002203579,0.00000655345,0.0003238947,0.000004508684,0.001007186],"genre_scores_gemma":[0.998933,0.0002242972,0.0001598395,0.00004284822,0.000001061539,0.000002105494,0.0001838447,0.00000394962,0.0004490549],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02817297,"threshold_uncertainty_score":0.08532774,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03581093825288505,"score_gpt":0.2193651641314667,"score_spread":0.1835542258785817,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}